Variant report

Variant	rs11784041
Chromosome Location	chr8:131366887-131366888
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:131364073..131367147-chr8:131368498..131370803,3	MCF-7	breast:
2	chr8:131354026..131357067-chr8:131366453..131369277,3	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10086773	0.84[EUR][1000 genomes]
rs10956523	0.83[EUR][1000 genomes]
rs13272051	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4504679	0.84[EUR][1000 genomes]
rs4574884	0.82[AFR][1000 genomes]
rs4609234	0.87[EUR][1000 genomes]
rs5027392	0.84[EUR][1000 genomes]
rs6994854	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7822048	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7832888	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869334	chr8:131025093-131651487	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv915580	chr8:131025093-131667578	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv533085	chr8:131042781-131755007	Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv870148	chr8:131206342-131373989	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:131346400-131368800	Weak transcription	Fetal Intestine Small	intestine
2	chr8:131347600-131368000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr8:131353800-131367600	Weak transcription	Dnd41	blood
4	chr8:131354400-131368800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr8:131354400-131368800	Weak transcription	Colonic Mucosa	Colon
6	chr8:131355400-131368400	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr8:131355400-131369000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr8:131355600-131369400	Weak transcription	Hela-S3	cervix
9	chr8:131357000-131368400	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr8:131358000-131369000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr8:131358800-131367600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr8:131358800-131368200	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr8:131359000-131369000	Weak transcription	Esophagus	oesophagus
14	chr8:131359600-131368000	Weak transcription	Primary hematopoietic stem cells	blood
15	chr8:131359600-131368600	Weak transcription	Liver	Liver
16	chr8:131359800-131368800	Weak transcription	Fetal Lung	lung
17	chr8:131359800-131369000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr8:131359800-131369600	Weak transcription	Fetal Kidney	kidney
19	chr8:131360000-131368400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr8:131360000-131368800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr8:131360000-131369000	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr8:131360000-131369000	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr8:131360000-131369200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr8:131360000-131369400	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr8:131360200-131369000	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr8:131360600-131367000	Weak transcription	Lung	lung
27	chr8:131360600-131368400	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr8:131360600-131369000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr8:131361200-131368600	Weak transcription	Colon Smooth Muscle	Colon
30	chr8:131361200-131368600	Weak transcription	Thymus	Thymus
31	chr8:131361400-131367800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
32	chr8:131361400-131368400	Enhancers	Primary monocytes fromperipheralblood	blood
33	chr8:131361400-131368800	Weak transcription	Placenta	Placenta
34	chr8:131361400-131368800	Weak transcription	Fetal Thymus	thymus
35	chr8:131361800-131367800	Weak transcription	Fetal Brain Female	brain
36	chr8:131362400-131368400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr8:131362800-131367000	Weak transcription	Aorta	Aorta
38	chr8:131362800-131369000	Weak transcription	Gastric	stomach
39	chr8:131362800-131369000	Weak transcription	Small Intestine	intestine
40	chr8:131363000-131367000	Weak transcription	Brain Substantia Nigra	brain
41	chr8:131363000-131367000	Weak transcription	Pancreas	Pancrea
42	chr8:131363000-131368000	Weak transcription	Brain Hippocampus Middle	brain
43	chr8:131363000-131368400	Weak transcription	Duodenum Mucosa	Duodenum
44	chr8:131363200-131368600	Weak transcription	Fetal Stomach	stomach
45	chr8:131363200-131368800	Weak transcription	Psoas Muscle	Psoas
46	chr8:131363400-131367400	Weak transcription	Brain Anterior Caudate	brain
47	chr8:131363400-131368400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
48	chr8:131363400-131369000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr8:131363600-131368000	Weak transcription	Primary B cells from peripheral blood	blood
50	chr8:131363600-131368200	Weak transcription	Adipose Nuclei	Adipose

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links