Variant report

Variant	rs11784534
Chromosome Location	chr8:103203083-103203084
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:103197100..103200107-chr8:103200649..103204258,3	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10505019	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1052069	0.94[ASN][1000 genomes]
rs1052071	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11774420	0.81[ASN][1000 genomes]
rs11774459	0.81[ASN][1000 genomes]
rs11776865	1.00[JPT][hapmap]
rs11777942	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs11778107	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs11783467	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11784180	0.81[ASN][1000 genomes]
rs11785514	0.93[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs11786397	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16869269	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16869276	0.81[ASN][1000 genomes]
rs16869282	1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs16869295	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs16918482	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2387995	0.81[ASN][1000 genomes]
rs28928571	0.81[ASN][1000 genomes]
rs28928592	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs28928597	0.81[ASN][1000 genomes]
rs28999671	0.87[ASN][1000 genomes]
rs28999676	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs28999706	0.81[ASN][1000 genomes]
rs29000274	0.81[ASN][1000 genomes]
rs29000286	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs29000294	0.94[ASN][1000 genomes]
rs3735720	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs3735721	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs3735722	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs3907099	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4329248	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5005121	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs57901015	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57978361	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60604862	0.88[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7836046	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7841131	1.00[JPT][hapmap];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020359	chr8:103109921-103318415	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1033829	chr8:103110057-103525696	Strong transcription Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv1021459	chr8:103163436-103401754	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv539701	chr8:103163436-103401754	Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
5	nsv1025935	chr8:103199207-103468322	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103200800-103203400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:103201800-103203600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr8:103202800-103203200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr8:103202800-103203200	Flanking Active TSS	HepG2	liver
5	chr8:103202800-103203400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
6	chr8:103202800-103203400	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
7	chr8:103202800-103203800	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr8:103203000-103203200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
9	chr8:103203000-103203200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
10	chr8:103203000-103203400	Enhancers	H1 Cell Line	embryonic stem cell
11	chr8:103203000-103204000	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr8:103203000-103204200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr8:103203000-103204400	Enhancers	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links