Variant report

Variant	rs11784821
Chromosome Location	chr8:11581032-11581033
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:11538562..11541468-chr8:11578782..11581146,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11785555	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11786824	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28473684	0.81[EUR][1000 genomes]
rs4269498	0.80[EUR][1000 genomes]
rs4469416	1.00[AFR][1000 genomes]
rs57341427	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs59101725	0.92[EUR][1000 genomes]
rs61277615	0.80[EUR][1000 genomes]
rs73203475	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73203478	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73203480	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73203482	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73203488	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73203490	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73203493	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73203500	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73205106	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73205108	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73205114	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73205120	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73205121	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7827193	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs7837066	0.80[EUR][1000 genomes]
rs7840794	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529399	chr8:10970091-11805960	Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
2	nsv1018978	chr8:11438267-11858466	Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv917963	chr8:11540723-11751798	Genic enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv1027378	chr8:11541739-11858466	Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	nsv1028229	chr8:11575762-11805961	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
6	nsv539475	chr8:11575762-11805961	Flanking Active TSS Genic enhancers Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
7	nsv428514	chr8:11580381-11765706	Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:11575200-11581800	Enhancers	Fetal Heart	heart
2	chr8:11576200-11584800	Enhancers	Liver	Liver
3	chr8:11577600-11582600	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr8:11578800-11581400	Weak transcription	Duodenum Mucosa	Duodenum
5	chr8:11578800-11581800	Weak transcription	HepG2	liver
6	chr8:11579200-11582000	Weak transcription	Pancreas	Pancrea
7	chr8:11579200-11582000	Weak transcription	Right Atrium	heart
8	chr8:11579800-11581200	Enhancers	Stomach Mucosa	stomach
9	chr8:11580000-11582800	Enhancers	Ovary	ovary
10	chr8:11580200-11582600	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr8:11580400-11581400	Weak transcription	Gastric	stomach
12	chr8:11580600-11581200	Genic enhancers	Fetal Intestine Small	intestine
13	chr8:11580800-11585200	Enhancers	Right Ventricle	heart
14	chr8:11581000-11586800	Enhancers	Left Ventricle	heart

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