Variant report

Variant	rs117848575
Chromosome Location	chr11:87035192-87035193
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:87028128..87030970-chr11:87034928..87037460,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FZD4-9	chr11:87034751-87035401	NONHSAT023518

Variant related genes	Relation type
ENSG00000166575	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043562	chr11:86755535-87547185	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv541120	chr11:86755535-87547185	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv1046288	chr11:86757573-87158571	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv521810	chr11:87034696-87037680	Weak transcription Enhancers Genic enhancers Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:87010200-87037200	Weak transcription	Fetal Muscle Trunk	muscle
2	chr11:87010600-87036800	Weak transcription	Psoas Muscle	Psoas
3	chr11:87011800-87036800	Weak transcription	Primary B cells from cord blood	blood
4	chr11:87012000-87040400	Weak transcription	Fetal Intestine Small	intestine
5	chr11:87012600-87036000	Weak transcription	Fetal Muscle Leg	muscle
6	chr11:87012600-87036400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr11:87012800-87044200	Weak transcription	Brain Hippocampus Middle	brain
8	chr11:87014400-87047400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr11:87015600-87039800	Weak transcription	Fetal Stomach	stomach
10	chr11:87015800-87040800	Weak transcription	Left Ventricle	heart
11	chr11:87018000-87039800	Weak transcription	Ovary	ovary
12	chr11:87018000-87040000	Weak transcription	Aorta	Aorta
13	chr11:87018000-87042800	Weak transcription	Lung	lung
14	chr11:87018200-87040800	Weak transcription	Small Intestine	intestine
15	chr11:87019800-87038000	Weak transcription	A549	lung
16	chr11:87020800-87039800	Weak transcription	HMEC	breast
17	chr11:87021600-87042400	Weak transcription	HSMMtube	muscle
18	chr11:87022000-87040600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr11:87025200-87039600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr11:87025400-87040800	Weak transcription	Stomach Smooth Muscle	stomach
21	chr11:87026400-87041000	Weak transcription	Colon Smooth Muscle	Colon
22	chr11:87027200-87036200	Weak transcription	GM12878-XiMat	blood
23	chr11:87027600-87043800	Weak transcription	Fetal Kidney	kidney
24	chr11:87028200-87041000	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr11:87028400-87040000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr11:87029400-87037600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr11:87029400-87037800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr11:87030400-87040200	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr11:87031400-87039400	Weak transcription	Esophagus	oesophagus
30	chr11:87032400-87036400	Weak transcription	Fetal Brain Male	brain
31	chr11:87032600-87038400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr11:87032800-87036800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr11:87033000-87038800	Weak transcription	Fetal Intestine Large	intestine
34	chr11:87033000-87040400	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr11:87033200-87036800	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr11:87033200-87037000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr11:87033200-87038800	Weak transcription	K562	blood
38	chr11:87033200-87038800	Weak transcription	NHDF-Ad	bronchial
39	chr11:87033200-87039000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
40	chr11:87033200-87039800	Weak transcription	HUVEC	blood vessel
41	chr11:87033200-87041400	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr11:87033400-87036000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr11:87033400-87036200	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr11:87033400-87036600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr11:87033400-87038800	Weak transcription	Rectal Mucosa Donor 29	rectum
46	chr11:87033400-87040200	Weak transcription	HepG2	liver
47	chr11:87033400-87040800	Weak transcription	Primary hematopoietic stem cells	blood
48	chr11:87033600-87035200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr11:87033600-87035400	Weak transcription	Dnd41	blood
50	chr11:87033600-87036800	Weak transcription	Primary T helper cells fromperipheralblood	blood

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