Variant report

Variant	rs11785740
Chromosome Location	chr8:3427849-3427850
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11780268	1.00[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs12675025	1.00[ASW][hapmap];0.84[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.81[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap]
rs12680424	1.00[CHB][hapmap];0.80[JPT][hapmap]
rs12681260	0.81[JPT][hapmap]
rs12681886	0.81[ASN][1000 genomes]
rs13248151	0.94[CHB][hapmap];0.85[JPT][hapmap]
rs13249863	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs13255417	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs13258825	0.94[CHB][hapmap];0.87[CHD][hapmap];0.85[JPT][hapmap]
rs13259862	0.81[JPT][hapmap]
rs13260637	0.94[CHB][hapmap];0.87[CHD][hapmap];0.85[JPT][hapmap]
rs13266061	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs13268363	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs13268547	0.93[CHB][hapmap]
rs13271675	1.00[CHB][hapmap];0.94[JPT][hapmap];0.97[ASN][1000 genomes]
rs13272675	1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs13273391	0.89[CHB][hapmap]
rs13275823	1.00[CHB][hapmap];0.80[JPT][hapmap]
rs13281116	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs1564573	1.00[CHB][hapmap];0.90[CHD][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs17395605	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs1871887	1.00[CHB][hapmap];0.80[JPT][hapmap];0.83[ASN][1000 genomes]
rs2170480	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2200075	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs2449184	0.83[CHB][hapmap]
rs4645579	0.94[CHB][hapmap];0.85[JPT][hapmap]
rs4875740	0.89[CHB][hapmap]
rs4875741	1.00[CHB][hapmap]
rs4875743	1.00[CHB][hapmap];0.91[CHD][hapmap];0.90[JPT][hapmap]
rs4875744	0.94[CHB][hapmap];0.90[CHD][hapmap];0.90[JPT][hapmap]
rs4875745	1.00[CHB][hapmap];0.83[JPT][hapmap]
rs4875746	1.00[CHB][hapmap];0.84[JPT][hapmap]
rs6558803	1.00[CHB][hapmap];0.87[CHD][hapmap];0.81[JPT][hapmap]
rs6996400	0.81[JPT][hapmap]
rs986183	1.00[CHB][hapmap];0.97[CHD][hapmap];0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs986945	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025209	chr8:3067655-3754882	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1026998	chr8:3102679-3593264	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1034076	chr8:3168033-3989947	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv539351	chr8:3168033-3989947	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1017164	chr8:3174168-4026811	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv539352	chr8:3174168-4026811	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1018218	chr8:3180287-4089011	Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv1028926	chr8:3318340-3667389	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
9	nsv539353	chr8:3318340-3667389	Enhancers Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
10	nsv427813	chr8:3339350-3501515	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:3427800-3428000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr8:3427800-3428000	Enhancers	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links