Variant report

Variant	rs11787537
Chromosome Location	chr9:93616619-93616620
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:93607214..93610736-chr9:93616305..93618724,3	MCF-7	breast:
2	chr9:93562366..93565810-chr9:93615193..93619315,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165025	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1173099	1.00[JPT][hapmap]
rs11792971	1.00[JPT][hapmap]
rs12555502	0.90[CEU][hapmap];0.86[EUR][1000 genomes]
rs17489214	0.80[CEU][hapmap];0.81[EUR][1000 genomes]
rs2065583	1.00[JPT][hapmap]
rs35758162	0.85[EUR][1000 genomes]
rs62559143	0.84[EUR][1000 genomes]
rs62559145	0.86[EUR][1000 genomes]
rs7030222	0.88[CEU][hapmap];0.86[EUR][1000 genomes]
rs72729051	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8773	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046989	chr9:93353987-93800416	Transcr. at gene 5' and 3' Weak transcription Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv831652	chr9:93527411-93696923	Bivalent Enhancer Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv893568	chr9:93539879-93774385	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1038685	chr9:93556174-93685729	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1039761	chr9:93598856-93677831	Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1039326	chr9:93598856-93685729	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv430078	chr9:93609668-93642766	Strong transcription Weak transcription Genic enhancers Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv1053252	chr9:93610132-93699103	Strong transcription Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93601800-93642200	Weak transcription	Rectal Smooth Muscle	rectum
2	chr9:93604800-93617200	Strong transcription	Spleen	Spleen
3	chr9:93605000-93622800	Weak transcription	Adipose Nuclei	Adipose
4	chr9:93605000-93633000	Weak transcription	Fetal Kidney	kidney
5	chr9:93605600-93617400	Strong transcription	Thymus	Thymus
6	chr9:93605800-93621400	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr9:93605800-93621600	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr9:93605800-93631000	Strong transcription	Primary neutrophils fromperipheralblood	blood
9	chr9:93606000-93619600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr9:93606200-93616800	Strong transcription	Primary hematopoietic stem cells	blood
11	chr9:93606600-93617400	Strong transcription	Rectal Mucosa Donor 29	rectum
12	chr9:93606600-93619200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr9:93607000-93620000	Strong transcription	Primary B cells from cord blood	blood
14	chr9:93608200-93624400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr9:93610400-93624600	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr9:93611200-93642200	Weak transcription	Stomach Mucosa	stomach
17	chr9:93611800-93620800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr9:93612400-93623200	Weak transcription	Colonic Mucosa	Colon
19	chr9:93613200-93621800	Weak transcription	Pancreas	Pancrea
20	chr9:93614800-93623800	Weak transcription	Left Ventricle	heart
21	chr9:93615000-93616800	Weak transcription	Fetal Lung	lung
22	chr9:93615200-93616800	Strong transcription	Fetal Stomach	stomach
23	chr9:93615400-93624000	Weak transcription	Gastric	stomach
24	chr9:93615600-93619000	Weak transcription	GM12878-XiMat	blood
25	chr9:93615600-93619200	Weak transcription	Duodenum Mucosa	Duodenum
26	chr9:93615600-93619800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr9:93615600-93619800	Weak transcription	Fetal Intestine Large	intestine
28	chr9:93615600-93619800	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr9:93615600-93623200	Weak transcription	Esophagus	oesophagus
30	chr9:93615600-93623600	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr9:93616200-93616800	Genic enhancers	Primary B cells from peripheral blood	blood
32	chr9:93616200-93617200	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
33	chr9:93616200-93617800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr9:93616200-93618400	Enhancers	HMEC	breast
35	chr9:93616400-93616800	ZNF genes & repeats	Lung	lung
36	chr9:93616400-93617000	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr9:93616400-93617200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr9:93616400-93617200	Enhancers	K562	blood
39	chr9:93616400-93617400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr9:93616400-93617400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr9:93616400-93617600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr9:93616600-93616800	Genic enhancers	Fetal Thymus	thymus
43	chr9:93616600-93617400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr9:93616600-93617800	Enhancers	Fetal Brain Female	brain
45	chr9:93616600-93617800	Enhancers	NHEK	skin
46	chr9:93616600-93619800	Weak transcription	Fetal Intestine Small	intestine

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