Variant report

Variant	rs11788028
Chromosome Location	chr9:96128218-96128219
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10992716	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1871155	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4743918	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4744227	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4744228	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7026490	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893576	chr9:95789960-96158277	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96124400-96128400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr9:96125000-96129200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr9:96126800-96128400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr9:96126800-96128800	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr9:96126800-96129200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr9:96126800-96130400	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr9:96127800-96128600	Enhancers	H1 Cell Line	embryonic stem cell
8	chr9:96127800-96128800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr9:96127800-96129400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr9:96127800-96129400	Strong transcription	Right Atrium	heart
11	chr9:96128200-96128400	Active TSS	HUES6 Cell Line	embryonic stem cell
12	chr9:96128200-96128800	Bivalent/Poised TSS	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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