Variant report

Variant	rs11788534
Chromosome Location	chr9:94908937-94908938
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NR2F2	chr9:94908858-94910266	K562	blood:	n/a	n/a
2	MAZ	chr9:94908815-94910334	IMR90	lung:	n/a	n/a
3	ZNF263	chr9:94908517-94909136	HEK293-T-REx	kidney:	n/a	chr9:94908971-94908980
4	ELF1	chr9:94908885-94909194	K562	blood:	n/a	chr9:94909054-94909067
5	POLR2A	chr9:94908920-94910304	K562	blood:	n/a	n/a
6	MXI1	chr9:94908833-94910541	IMR90	lung:	n/a	n/a
7	JUN	chr9:94908789-94910458	K562	blood:	n/a	chr9:94909396-94909403

No.	Distal block	Cell Line	Cell type
1	chr9:94902223..94905302-chr9:94908199..94910430,4	MCF-7	breast:
2	chr9:94907081..94909170-chr9:94913018..94916076,3	MCF-7	breast:
3	chr9:94907173..94909059-chr9:95054876..95056486,2	MCF-7	breast:
4	chr9:94907697..94909675-chr9:94998713..95001365,2	K562	blood:

Variant related genes	Relation type
ENSG00000238996	TF binding region
LINC00475	TF binding region
ENSG00000225511	Chromatin interaction
ENSG00000196305	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1105085	0.81[ASN][1000 genomes]
rs1964170	0.81[ASN][1000 genomes]
rs3858095	0.82[ASN][1000 genomes]
rs6479408	0.80[ASN][1000 genomes]
rs7035786	0.98[ASN][1000 genomes]
rs7866918	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949008	chr9:94500776-95182133	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv1050845	chr9:94687959-95312406	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv1046733	chr9:94690622-95138564	Genic enhancers Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
4	nsv530947	chr9:94697309-95093377	Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
5	nsv917089	chr9:94857047-95099848	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
6	nsv969760	chr9:94877924-94966209	Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
7	nsv893572	chr9:94891778-94944778	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94904000-94909400	Weak transcription	Right Atrium	heart
2	chr9:94904200-94909000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr9:94904200-94909000	Weak transcription	Gastric	stomach
4	chr9:94906800-94911200	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr9:94907800-94910400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr9:94908000-94910000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr9:94908200-94909400	Enhancers	Muscle Satellite Cultured Cells	--
8	chr9:94908200-94910400	Enhancers	HUVEC	blood vessel
9	chr9:94908400-94909000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr9:94908400-94909000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr9:94908400-94909000	Enhancers	NHLF	lung
12	chr9:94908400-94909000	Enhancers	Osteobl	bone
13	chr9:94908400-94909200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr9:94908400-94910000	Enhancers	Fetal Stomach	stomach
15	chr9:94908400-94910400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr9:94908400-94910400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr9:94908400-94911000	Enhancers	Fetal Muscle Trunk	muscle
18	chr9:94908600-94909000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr9:94908600-94909000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr9:94908600-94909000	Enhancers	A549	lung
21	chr9:94908600-94909000	Enhancers	Monocytes-CD14+_RO01746	blood
22	chr9:94908600-94909200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr9:94908600-94909400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr9:94908600-94909400	Enhancers	Duodenum Smooth Muscle	Duodenum
25	chr9:94908600-94910200	Enhancers	Primary monocytes fromperipheralblood	blood
26	chr9:94908600-94910400	Enhancers	Fetal Muscle Leg	muscle
27	chr9:94908600-94910400	Enhancers	Ovary	ovary
28	chr9:94908600-94910400	Enhancers	Placenta Amnion	Placenta Amnion
29	chr9:94908600-94910400	Enhancers	NHDF-Ad	bronchial
30	chr9:94908800-94909000	Enhancers	Adipose Nuclei	Adipose
31	chr9:94908800-94909000	Enhancers	K562	blood
32	chr9:94908800-94909200	Enhancers	Breast Myoepithelial Primary Cells	Breast
33	chr9:94908800-94909200	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
34	chr9:94908800-94909200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr9:94908800-94909200	Enhancers	NHEK	skin
36	chr9:94908800-94909400	Enhancers	H9 Cell Line	embryonic stem cell
37	chr9:94908800-94909400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
38	chr9:94908800-94909400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr9:94908800-94909400	Enhancers	HMEC	breast
40	chr9:94908800-94909600	Active TSS	Rectal Smooth Muscle	rectum
41	chr9:94908800-94909600	Flanking Active TSS	HSMM	muscle
42	chr9:94908800-94909600	Flanking Active TSS	HSMMtube	muscle
43	chr9:94908800-94909800	Enhancers	Primary hematopoietic stem cells	blood
44	chr9:94908800-94909800	Enhancers	Esophagus	oesophagus
45	chr9:94908800-94909800	Enhancers	Skeletal Muscle Male	skeletal muscle
46	chr9:94908800-94910000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr9:94908800-94910000	Enhancers	Primary neutrophils fromperipheralblood	blood
48	chr9:94908800-94910000	Enhancers	Primary hematopoietic stem cells short term culture	blood
49	chr9:94908800-94910000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr9:94908800-94910000	Enhancers	Brain Hippocampus Middle	brain

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