Variant report

Variant	rs11789505
Chromosome Location	chr9:110394583-110394584
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:110394129..110396586-chr9:110398841..110400820,2	MCF-7	breast:
2	chr9:110248310..110253856-chr9:110387888..110398318,15	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136826	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs73653613	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7864185	0.91[CEU][hapmap];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530948	chr9:109760752-110413602	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	nsv831683	chr9:110275212-110461288	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv893700	chr9:110365337-110451516	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110387000-110399600	Weak transcription	Colonic Mucosa	Colon
2	chr9:110390400-110399600	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr9:110390400-110400000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr9:110391200-110396000	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr9:110391800-110395600	Weak transcription	Stomach Mucosa	stomach
6	chr9:110391800-110399600	Weak transcription	Pancreas	Pancrea
7	chr9:110392600-110399200	Weak transcription	Spleen	Spleen
8	chr9:110393200-110394600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr9:110393200-110397800	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr9:110393400-110394800	Enhancers	Fetal Muscle Trunk	muscle
11	chr9:110393400-110396400	Enhancers	Fetal Muscle Leg	muscle
12	chr9:110393400-110397800	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr9:110393400-110397800	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr9:110393600-110394600	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr9:110393600-110394800	Enhancers	Brain Germinal Matrix	brain
16	chr9:110393600-110396200	Enhancers	H9 Cell Line	embryonic stem cell
17	chr9:110393600-110396200	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr9:110393600-110396200	Enhancers	Fetal Lung	lung
19	chr9:110393600-110396400	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr9:110393600-110396400	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr9:110393600-110396400	Enhancers	Fetal Stomach	stomach
22	chr9:110393600-110399200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr9:110393800-110395600	Enhancers	Fetal Brain Female	brain
24	chr9:110393800-110396200	Enhancers	iPS-20b Cell Line	embryonic stem cell
25	chr9:110393800-110396200	Enhancers	Fetal Kidney	kidney
26	chr9:110393800-110396400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
27	chr9:110393800-110396600	Enhancers	Fetal Intestine Small	intestine
28	chr9:110394000-110394800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr9:110394000-110394800	Enhancers	Adipose Nuclei	Adipose
30	chr9:110394000-110394800	Enhancers	Ovary	ovary
31	chr9:110394000-110394800	Enhancers	Right Atrium	heart
32	chr9:110394000-110395400	Weak transcription	Fetal Intestine Large	intestine
33	chr9:110394000-110395800	Enhancers	NHDF-Ad	bronchial
34	chr9:110394000-110396200	Enhancers	ES-I3 Cell Line	embryonic stem cell
35	chr9:110394000-110396200	Enhancers	H1 Cell Line	embryonic stem cell
36	chr9:110394200-110394600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr9:110394200-110394600	Enhancers	Brain Hippocampus Middle	brain
38	chr9:110394200-110394600	Enhancers	Fetal Brain Male	brain
39	chr9:110394200-110394800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr9:110394200-110394800	Enhancers	Rectal Mucosa Donor 31	rectum
41	chr9:110394200-110395200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
42	chr9:110394200-110396400	Enhancers	iPS-15b Cell Line	embryonic stem cell
43	chr9:110394400-110394600	Enhancers	iPS-18 Cell Line	embryonic stem cell
44	chr9:110394400-110394600	Enhancers	Skeletal Muscle Female	skeletal muscle
45	chr9:110394400-110394800	Enhancers	Colon Smooth Muscle	Colon
46	chr9:110394400-110394800	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr9:110394400-110394800	Enhancers	Lung	lung
48	chr9:110394400-110397800	Weak transcription	Brain Anterior Caudate	brain
49	chr9:110394400-110398000	Weak transcription	Brain Cingulate Gyrus	brain

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