Variant report

Variant	rs11789639
Chromosome Location	chr9:71880916-71880917
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11137828	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12336950	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12342702	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12350141	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1538581	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17063106	0.86[ASN][1000 genomes]
rs17063272	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17503260	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1962086	1.00[ASN][1000 genomes]
rs2871229	1.00[ASN][1000 genomes]
rs55787714	1.00[ASN][1000 genomes]
rs56819833	1.00[ASN][1000 genomes]
rs56929626	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57557355	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57738649	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051723	chr9:71398713-71971285	Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv931684	chr9:71417110-71957723	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv1049175	chr9:71418242-71986910	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv1035823	chr9:71465139-71901672	Genic enhancers Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	nsv466396	chr9:71471912-71935577	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
6	nsv614548	chr9:71471912-71935577	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
7	nsv1035477	chr9:71511927-71959487	Enhancers Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
8	nsv893416	chr9:71597840-71888601	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
9	nsv817406	chr9:71675454-72179318	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
10	nsv831610	chr9:71846941-72016835	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
11	esv1796249	chr9:71862129-71911566	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:71866400-71881000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:71869400-71887200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr9:71869600-71881000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr9:71869600-71881000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr9:71869800-71881000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr9:71869800-71883000	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr9:71871800-71881000	Weak transcription	HUVEC	blood vessel
8	chr9:71872200-71881000	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr9:71872400-71883600	Weak transcription	Lung	lung
10	chr9:71872600-71881000	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr9:71873000-71888400	Weak transcription	Right Atrium	heart
12	chr9:71879400-71881200	Enhancers	Gastric	stomach
13	chr9:71879600-71881000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr9:71879600-71881000	Enhancers	Fetal Heart	heart
15	chr9:71879600-71881600	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr9:71879800-71888400	Weak transcription	Left Ventricle	heart
17	chr9:71880200-71881000	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr9:71880200-71881200	Enhancers	Osteobl	bone
19	chr9:71880600-71881200	Enhancers	Stomach Mucosa	stomach
20	chr9:71880600-71881400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr9:71880600-71881600	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr9:71880800-71881000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
23	chr9:71880800-71881200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr9:71880800-71881200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr9:71880800-71881200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr9:71880800-71881200	Enhancers	NHDF-Ad	bronchial
27	chr9:71880800-71881600	Enhancers	H1 Cell Line	embryonic stem cell
28	chr9:71880800-71881600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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