Variant report

Variant	rs11789911
Chromosome Location	chr9:117961558-117961559
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11789200	0.81[TSI][hapmap]
rs11789268	0.81[TSI][hapmap]
rs11791562	0.81[TSI][hapmap]
rs13290457	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv615250	chr9:117768021-118012841	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv916912	chr9:117770039-118014140	Flanking Active TSS Enhancers Strong transcription Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv831697	chr9:117860416-118023927	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv893769	chr9:117936903-117985886	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11789911	TXN	cis	parietal	SCAN

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117930000-117964400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr9:117955600-117969000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr9:117957000-117962800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr9:117959400-117968600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr9:117960200-117961600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr9:117960600-117962600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr9:117960600-117962600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr9:117960600-117962800	Weak transcription	Stomach Smooth Muscle	stomach
9	chr9:117960600-117963200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr9:117960600-117964400	Weak transcription	Fetal Muscle Leg	muscle
11	chr9:117960600-117964600	Weak transcription	NH-A	brain
12	chr9:117960600-117967400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr9:117960600-117969000	Weak transcription	Spleen	Spleen
14	chr9:117960800-117962000	Weak transcription	Fetal Lung	lung
15	chr9:117960800-117962200	Weak transcription	NHDF-Ad	bronchial
16	chr9:117960800-117962400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr9:117960800-117962400	Weak transcription	Colon Smooth Muscle	Colon
18	chr9:117960800-117962800	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr9:117960800-117963000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr9:117960800-117963000	Weak transcription	HMEC	breast
21	chr9:117960800-117963000	Weak transcription	HSMM	muscle
22	chr9:117960800-117963000	Weak transcription	NHEK	skin
23	chr9:117960800-117963000	Weak transcription	Osteobl	bone
24	chr9:117960800-117963200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr9:117960800-117963200	Weak transcription	NHLF	lung
26	chr9:117960800-117963400	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr9:117960800-117964600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr9:117960800-117964600	Weak transcription	Fetal Stomach	stomach
29	chr9:117960800-117965000	Weak transcription	Rectal Smooth Muscle	rectum
30	chr9:117960800-117968800	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr9:117960800-117969400	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr9:117960800-117975800	Weak transcription	Fetal Kidney	kidney
33	chr9:117961000-117963000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr9:117961400-117961600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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