Variant report

Variant	rs11791418
Chromosome Location	chr9:118145339-118145340
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10124685	0.87[CEU][hapmap];0.84[EUR][1000 genomes]
rs10817756	0.90[EUR][1000 genomes]
rs10817758	0.80[EUR][1000 genomes]
rs10982719	0.80[EUR][1000 genomes]
rs10982722	0.85[EUR][1000 genomes]
rs10982724	0.88[EUR][1000 genomes]
rs10982725	0.87[EUR][1000 genomes]
rs10982726	0.86[EUR][1000 genomes]
rs12336386	0.83[EUR][1000 genomes]
rs13296996	0.86[CEU][hapmap]
rs3750505	0.88[EUR][1000 genomes]
rs7018671	0.92[CEU][hapmap];0.88[EUR][1000 genomes]
rs9408863	0.86[CEU][hapmap];0.84[EUR][1000 genomes]
rs9408864	0.87[EUR][1000 genomes]
rs9409148	0.83[CEU][hapmap];0.84[EUR][1000 genomes]
rs9409149	0.87[EUR][1000 genomes]
rs9409150	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv615251	chr9:117975864-118514444	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv948346	chr9:118107565-118718197	Enhancers Bivalent Enhancer Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	esv2761552	chr9:118113846-118157488	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:118144800-118145400	ZNF genes & repeats	Pancreas	Pancrea
2	chr9:118144800-118145600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr9:118144800-118146000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr9:118144800-118146000	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr9:118145000-118145400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
6	chr9:118145200-118145400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
7	chr9:118145200-118145600	ZNF genes & repeats	Liver	Liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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