Variant report

Variant	rs11791531
Chromosome Location	chr9:115323960-115323961
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:115320215..115322634-chr9:115323270..115325136,2	MCF-7	breast:
2	chr9:115308547..115310764-chr9:115323214..115325298,2	K562	blood:
3	chr9:115318710..115321449-chr9:115323792..115327338,3	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1693411	1.00[ASN][1000 genomes]
rs1711746	1.00[ASN][1000 genomes]
rs1711747	1.00[ASN][1000 genomes]
rs1832890	1.00[ASN][1000 genomes]
rs2051018	1.00[ASN][1000 genomes]
rs2153837	1.00[ASN][1000 genomes]
rs2185769	1.00[ASN][1000 genomes]
rs2645985	1.00[ASN][1000 genomes]
rs2645994	1.00[ASN][1000 genomes]
rs2796028	1.00[ASN][1000 genomes]
rs2796031	1.00[ASN][1000 genomes]
rs2796035	1.00[ASN][1000 genomes]
rs55912580	1.00[ASN][1000 genomes]
rs56178561	1.00[ASN][1000 genomes]
rs786961	1.00[ASN][1000 genomes]
rs786965	1.00[ASN][1000 genomes]
rs786966	1.00[ASN][1000 genomes]
rs786967	1.00[ASN][1000 genomes]
rs786968	1.00[ASN][1000 genomes]
rs786969	1.00[ASN][1000 genomes]
rs786972	1.00[ASN][1000 genomes]
rs786973	1.00[ASN][1000 genomes]
rs786977	1.00[ASN][1000 genomes]
rs787278	1.00[ASN][1000 genomes]
rs787281	1.00[ASN][1000 genomes]
rs787285	1.00[ASN][1000 genomes]
rs787286	1.00[ASN][1000 genomes]
rs787287	1.00[ASN][1000 genomes]
rs787291	1.00[ASN][1000 genomes]
rs787296	1.00[ASN][1000 genomes]
rs787299	1.00[ASN][1000 genomes]
rs787302	1.00[ASN][1000 genomes]
rs787303	1.00[ASN][1000 genomes]
rs947609	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051625	chr9:115194070-115389428	Strong transcription Enhancers Active TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	esv2758198	chr9:115240454-116002951	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	esv2759710	chr9:115240454-116002951	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
4	nsv466488	chr9:115282036-115371397	Enhancers Strong transcription Genic enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv615197	chr9:115282036-115371397	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:115315400-115324600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:115315400-115344000	Weak transcription	Esophagus	oesophagus
3	chr9:115319000-115332400	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr9:115319200-115324000	Weak transcription	Pancreas	Pancrea
5	chr9:115319200-115324200	Weak transcription	HepG2	liver
6	chr9:115319400-115324400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr9:115319400-115326000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr9:115319600-115331400	Weak transcription	Brain Germinal Matrix	brain
9	chr9:115319800-115324400	Weak transcription	Stomach Mucosa	stomach
10	chr9:115319800-115324600	Weak transcription	Fetal Intestine Large	intestine
11	chr9:115319800-115334400	Weak transcription	Gastric	stomach
12	chr9:115320000-115324400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr9:115321400-115324800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr9:115321600-115324800	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr9:115321800-115324000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr9:115321800-115324600	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr9:115321800-115324800	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr9:115322000-115324200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr9:115322000-115324600	Weak transcription	Left Ventricle	heart
20	chr9:115322000-115331400	Weak transcription	HSMMtube	muscle
21	chr9:115322000-115333200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr9:115322000-115337000	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr9:115322200-115324600	Weak transcription	Fetal Heart	heart
24	chr9:115322800-115324600	Weak transcription	Fetal Intestine Small	intestine
25	chr9:115323000-115325200	Enhancers	K562	blood

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