Variant report

Variant	rs117916577
Chromosome Location	chr11:5666888-5666889
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	11:5469844-5475173..11:5661051-5666977	H1-hESC	embryonic stem cell:	embryo
2	chr11:5540984..5543970-chr11:5665304..5667004,2	K562	blood:

Variant related genes	Relation type
ENSG00000187918	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046068	chr11:5335943-6063742	Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
2	nsv896939	chr11:5497799-5809548	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
3	nsv553241	chr11:5506034-6203685	Genic enhancers Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
4	nsv1041568	chr11:5585716-5765688	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv1053414	chr11:5612989-6030212	Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
6	nsv530216	chr11:5614439-6468232	Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
7	nsv553273	chr11:5639873-5871831	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
8	esv3351871	chr11:5666376-5668324	Weak transcription Strong transcription Enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:5647000-5698800	Weak transcription	Colonic Mucosa	Colon
2	chr11:5647400-5667200	Weak transcription	Rectal Smooth Muscle	rectum
3	chr11:5647400-5669400	Weak transcription	Right Ventricle	heart
4	chr11:5647400-5675600	Weak transcription	Pancreas	Pancrea
5	chr11:5647400-5689400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr11:5647600-5668000	Weak transcription	A549	lung
7	chr11:5647800-5690600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr11:5649200-5695600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr11:5655800-5674200	Weak transcription	Colon Smooth Muscle	Colon
10	chr11:5656200-5667000	Weak transcription	NHLF	lung
11	chr11:5656200-5675000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr11:5656400-5667000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr11:5656400-5684600	Weak transcription	Osteobl	bone
14	chr11:5656400-5688800	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr11:5657400-5668400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr11:5661600-5667800	Weak transcription	Brain Substantia Nigra	brain
17	chr11:5662000-5667000	Strong transcription	Placenta	Placenta
18	chr11:5663600-5667000	Weak transcription	Fetal Muscle Trunk	muscle
19	chr11:5663600-5667200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr11:5663600-5669000	Weak transcription	Dnd41	blood
21	chr11:5663800-5673600	Weak transcription	Aorta	Aorta
22	chr11:5664000-5685000	Weak transcription	Fetal Thymus	thymus
23	chr11:5664000-5686200	Weak transcription	Small Intestine	intestine
24	chr11:5664000-5686200	Weak transcription	Thymus	Thymus
25	chr11:5664000-5699400	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr11:5664200-5671600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr11:5665000-5667800	Weak transcription	Primary neutrophils fromperipheralblood	blood
28	chr11:5665200-5667400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr11:5665200-5667400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr11:5665400-5667200	Weak transcription	Fetal Muscle Leg	muscle
31	chr11:5665400-5667200	Weak transcription	Stomach Smooth Muscle	stomach
32	chr11:5665400-5667400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr11:5665400-5667800	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr11:5665400-5668400	Weak transcription	Duodenum Mucosa	Duodenum
35	chr11:5665400-5669400	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr11:5665400-5682600	Weak transcription	Primary T cells from cord blood	blood
37	chr11:5665400-5682600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr11:5665400-5685200	Weak transcription	Primary T cells fromperipheralblood	blood
39	chr11:5665400-5685400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr11:5665400-5685400	Weak transcription	Primary hematopoietic stem cells	blood
41	chr11:5665400-5685400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr11:5665400-5685600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr11:5665400-5685600	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr11:5665400-5685600	Weak transcription	GM12878-XiMat	blood
45	chr11:5665400-5685800	Weak transcription	Esophagus	oesophagus
46	chr11:5665400-5685800	Weak transcription	Ovary	ovary
47	chr11:5665400-5685800	Weak transcription	Spleen	Spleen
48	chr11:5665600-5668000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr11:5665600-5668000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr11:5665600-5668000	Weak transcription	Fetal Kidney	kidney

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links