Variant report

Variant	rs11792768
Chromosome Location	chr9:100341860-100341861
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:100333571..100335590-chr9:100340872..100342993,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10983035	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11789701	0.95[ASN][1000 genomes]
rs11795334	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12375457	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12379728	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12380094	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12685683	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1475543	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1475544	0.94[EUR][1000 genomes]
rs2480721	0.81[ASN][1000 genomes]
rs2773357	0.87[ASN][1000 genomes]
rs3176689	0.81[AMR][1000 genomes]
rs56237852	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73656827	0.80[EUR][1000 genomes]
rs7872493	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039240	chr9:100292680-100415269	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv540179	chr9:100292680-100415269	Genic enhancers Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv893610	chr9:100324086-100496160	Active TSS Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100327000-100349200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr9:100333600-100361800	Weak transcription	Gastric	stomach
3	chr9:100334200-100356000	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr9:100334400-100356000	Weak transcription	Brain Cingulate Gyrus	brain
5	chr9:100334400-100356400	Weak transcription	HSMMtube	muscle
6	chr9:100334600-100353600	Weak transcription	Colon Smooth Muscle	Colon
7	chr9:100334800-100355600	Weak transcription	Rectal Smooth Muscle	rectum
8	chr9:100335600-100356600	Weak transcription	Brain Angular Gyrus	brain
9	chr9:100336200-100349200	Weak transcription	K562	blood
10	chr9:100336200-100356200	Weak transcription	Aorta	Aorta
11	chr9:100336200-100360000	Weak transcription	Brain Substantia Nigra	brain
12	chr9:100338200-100356200	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr9:100338200-100356800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr9:100338400-100353400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr9:100338400-100356000	Weak transcription	Brain Anterior Caudate	brain
16	chr9:100338400-100361600	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr9:100338600-100353200	Weak transcription	Fetal Muscle Leg	muscle
18	chr9:100338600-100360800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr9:100340400-100342400	Enhancers	Adipose Nuclei	Adipose
20	chr9:100340600-100342400	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr9:100340800-100342200	Enhancers	Left Ventricle	heart
22	chr9:100340800-100342200	Enhancers	Skeletal Muscle Female	skeletal muscle
23	chr9:100340800-100342400	Enhancers	Psoas Muscle	Psoas
24	chr9:100340800-100342400	Strong transcription	Stomach Smooth Muscle	stomach
25	chr9:100341000-100342400	Enhancers	Right Ventricle	heart
26	chr9:100341200-100358400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr9:100341600-100353600	Weak transcription	Ovary	ovary
28	chr9:100341600-100356000	Weak transcription	Right Atrium	heart
29	chr9:100341800-100342400	Enhancers	Fetal Heart	heart

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