Variant report

Variant	rs11793532
Chromosome Location	chr9:18771036-18771037
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:18769799..18772875-chr9:18776003..18779587,3	K562	blood:
2	chr9:18770497..18772251-chr9:18783540..18785289,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11787850	0.80[ASN][1000 genomes]
rs11791705	0.87[CEU][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs11792179	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs11794922	1.00[JPT][hapmap]
rs12377429	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491807	chr9:18243672-19009770	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv525659	chr9:18288212-19009041	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1019127	chr9:18288271-18996288	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv1029449	chr9:18414752-18829127	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
5	nsv540077	chr9:18414752-18829127	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
6	nsv1030931	chr9:18414752-18903530	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
7	nsv892691	chr9:18519699-18805483	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
8	nsv892692	chr9:18519699-19045502	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
9	nsv949111	chr9:18758205-18994588	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:18746400-18775800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:18748200-18779600	Weak transcription	Colonic Mucosa	Colon
3	chr9:18749800-18775600	Weak transcription	Fetal Muscle Trunk	muscle
4	chr9:18755200-18776800	Weak transcription	Aorta	Aorta
5	chr9:18756800-18787200	Weak transcription	HSMMtube	muscle
6	chr9:18757000-18776400	Weak transcription	NHLF	lung
7	chr9:18757000-18778200	Weak transcription	HUVEC	blood vessel
8	chr9:18758800-18777000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr9:18760800-18773000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr9:18764000-18781000	Strong transcription	Osteobl	bone
11	chr9:18764800-18775800	Weak transcription	Pancreas	Pancrea
12	chr9:18768400-18772000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr9:18768800-18773200	Enhancers	Fetal Heart	heart
14	chr9:18768800-18780200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr9:18769200-18772000	Enhancers	Fetal Stomach	stomach
16	chr9:18769200-18776800	Strong transcription	NHDF-Ad	bronchial
17	chr9:18769200-18780200	Strong transcription	NH-A	brain
18	chr9:18769600-18772200	Enhancers	Colon Smooth Muscle	Colon
19	chr9:18769600-18772800	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr9:18769600-18776200	Strong transcription	HSMM	muscle
21	chr9:18769800-18771400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr9:18770000-18771600	Enhancers	Fetal Muscle Leg	muscle
23	chr9:18770000-18775800	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr9:18770600-18771200	Flanking Active TSS	Stomach Smooth Muscle	stomach
25	chr9:18770600-18772200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr9:18770600-18773200	Enhancers	Adipose Nuclei	Adipose
27	chr9:18770800-18771600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr9:18770800-18771600	Enhancers	Fetal Kidney	kidney
29	chr9:18770800-18771600	Enhancers	Right Atrium	heart
30	chr9:18771000-18771400	Enhancers	Rectal Smooth Muscle	rectum
31	chr9:18771000-18771600	Enhancers	Left Ventricle	heart
32	chr9:18771000-18771600	Enhancers	Ovary	ovary
33	chr9:18771000-18772200	Enhancers	Fetal Lung	lung
34	chr9:18771000-18781600	Strong transcription	Muscle Satellite Cultured Cells	--

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