Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ESRRA	chr9:117458747-117461479	GM12878	blood:	n/a	chr9:117459306-117459322 chr9:117461416-117461426 chr9:117461414-117461427 chr9:117459301-117459317 chr9:117461414-117461430 chr9:117459308-117459318 chr9:117461414-117461426 chr9:117459308-117459318

Variant related genes	Relation type
ENSG00000230284	TF binding region

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11788301	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11789254	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11789913	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11790078	0.93[EUR][1000 genomes]
rs11791529	0.86[YRI][hapmap];0.87[AFR][1000 genomes]
rs11793039	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs11793592	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11793719	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11793753	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11794322	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11795358	0.80[EUR][1000 genomes]
rs16930795	0.86[YRI][hapmap];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16930910	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16930928	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17235713	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs17237046	0.84[AFR][1000 genomes]
rs17816047	0.86[YRI][hapmap];0.82[AFR][1000 genomes]
rs2031877	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28420964	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs41278671	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831694	chr9:117328640-117502785	Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv893766	chr9:117385992-117516418	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1042718	chr9:117435306-117488969	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117457600-117462200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
2	chr9:117460000-117462200	Weak transcription	NHEK	skin
3	chr9:117460000-117463800	Weak transcription	HSMM	muscle
4	chr9:117460000-117464000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr9:117460000-117464400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr9:117460200-117463200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr9:117460200-117463400	Weak transcription	Hela-S3	cervix
8	chr9:117460200-117464200	Weak transcription	NHDF-Ad	bronchial
9	chr9:117461000-117462200	ZNF genes & repeats	GM12878-XiMat	blood
10	chr9:117461000-117464200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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