Variant report

Variant	rs1179436
Chromosome Location	chr12:120787193-120787194
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:120783778..120785345-chr12:120786045..120787707,2	MCF-7	breast:
2	chr12:120786778..120788391-chr12:120790121..120792012,2	K562	blood:
3	chr12:120787191..120790083-chr12:120792780..120795331,2	MCF-7	breast:
4	chr12:120784433..120787362-chr12:120891914..120893925,2	MCF-7	breast:
5	chr12:120636593..120640468-chr12:120786216..120790624,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000255857	Chromatin interaction
ENSG00000089157	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1076206	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1179430	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1179433	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1179434	0.84[ASN][1000 genomes]
rs1179437	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1179438	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1179440	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1179441	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1179442	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1179443	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1179445	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1179446	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1179447	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1179449	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1183783	0.85[ASN][1000 genomes]
rs1184532	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1306624	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs206948	0.87[EUR][1000 genomes]
rs206949	0.82[EUR][1000 genomes]
rs206952	0.88[EUR][1000 genomes]
rs2261612	0.86[EUR][1000 genomes]
rs2283367	0.91[ASN][1000 genomes]
rs2285679	0.96[ASN][1000 genomes]
rs2522131	0.86[EUR][1000 genomes]
rs2522133	0.87[EUR][1000 genomes]
rs2522134	0.88[EUR][1000 genomes]
rs2951690	0.89[EUR][1000 genomes]
rs3782901	0.91[ASN][1000 genomes]
rs735382	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7484571	0.82[ASN][1000 genomes]
rs757122	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs916842	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899555	chr12:120519124-120840522	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	499 gene(s)	inside rSNPs	diseases
2	nsv1047447	chr12:120645330-120808621	Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	436 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:120764000-120799200	Weak transcription	Right Atrium	heart
2	chr12:120776000-120793200	Weak transcription	Fetal Brain Male	brain
3	chr12:120778600-120794600	Weak transcription	Brain Anterior Caudate	brain
4	chr12:120779200-120794600	Strong transcription	Cortex derived primary cultured neurospheres	brain
5	chr12:120779400-120796800	Strong transcription	Brain Germinal Matrix	brain
6	chr12:120779600-120799000	Weak transcription	Fetal Heart	heart
7	chr12:120779800-120794600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr12:120779800-120797400	Strong transcription	Fetal Brain Female	brain
9	chr12:120779800-120798800	Strong transcription	Fetal Intestine Small	intestine
10	chr12:120780200-120787400	Weak transcription	Pancreas	Pancrea
11	chr12:120780200-120794600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr12:120780400-120787400	Weak transcription	Liver	Liver
13	chr12:120780400-120797600	Strong transcription	Fetal Stomach	stomach
14	chr12:120780800-120788800	Weak transcription	Brain Cingulate Gyrus	brain
15	chr12:120780800-120792200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr12:120780800-120803200	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr12:120781000-120794200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr12:120781000-120794600	Strong transcription	HUES6 Cell Line	embryonic stem cell
19	chr12:120781000-120794600	Weak transcription	Brain Hippocampus Middle	brain
20	chr12:120781000-120796000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
21	chr12:120781000-120796200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr12:120781000-120796800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
23	chr12:120781200-120794600	Strong transcription	HUES48 Cell Line	embryonic stem cell
24	chr12:120781200-120796000	Strong transcription	H1 Cell Line	embryonic stem cell
25	chr12:120781200-120796600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr12:120781200-120796800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr12:120781400-120796600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr12:120781600-120794600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr12:120781800-120794600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr12:120781800-120794600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr12:120782000-120790200	Weak transcription	Fetal Kidney	kidney
32	chr12:120783400-120794600	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr12:120783600-120794600	Weak transcription	Brain Angular Gyrus	brain
34	chr12:120783800-120794200	Weak transcription	Brain Substantia Nigra	brain
35	chr12:120783800-120799000	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr12:120784600-120788400	Weak transcription	Ovary	ovary
37	chr12:120784800-120800400	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr12:120785600-120787800	Weak transcription	Stomach Mucosa	stomach
39	chr12:120785800-120788600	Weak transcription	Right Ventricle	heart
40	chr12:120785800-120794400	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr12:120786000-120787400	Weak transcription	Gastric	stomach
42	chr12:120786000-120788400	Weak transcription	Spleen	Spleen
43	chr12:120786000-120788800	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr12:120786000-120790000	Weak transcription	Fetal Lung	lung
45	chr12:120786000-120790400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr12:120786000-120793600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr12:120786000-120796200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
48	chr12:120786200-120787800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr12:120786200-120787800	Weak transcription	Lung	lung
50	chr12:120786200-120788000	Weak transcription	Duodenum Mucosa	Duodenum

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