Variant report

Variant	rs11794899
Chromosome Location	chr9:85404833-85404834
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1005796	0.81[EUR][1000 genomes]
rs1005990	0.81[EUR][1000 genomes]
rs1040870	0.84[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs10491547	0.84[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs10867882	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10867883	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10867885	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11139766	0.94[ASN][1000 genomes]
rs11139771	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11139776	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11139799	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11139800	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11792788	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11792807	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1570228	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1998303	0.83[AFR][1000 genomes]
rs2208610	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2208611	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2208613	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2224518	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2224519	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4877236	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4877237	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4877238	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4877707	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4877708	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4877710	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4877711	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4877712	0.84[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs6559683	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6559684	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7021608	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7026053	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7038824	0.81[EUR][1000 genomes]
rs766661	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7853116	0.81[EUR][1000 genomes]
rs7860548	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs963728	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9644990	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9919044	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035314	chr9:85348780-85549246	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv540161	chr9:85348780-85549246	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1039930	chr9:85349993-85536746	Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85395400-85424800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr9:85403800-85405000	Strong transcription	ES-I3 Cell Line	embryonic stem cell
3	chr9:85404000-85405000	Strong transcription	HUES6 Cell Line	embryonic stem cell
4	chr9:85404200-85407800	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr9:85404400-85406800	Enhancers	Primary hematopoietic stem cells	blood
6	chr9:85404400-85406800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr9:85404600-85420400	Weak transcription	Gastric	stomach
8	chr9:85404600-85422200	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr9:85404600-85422200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr9:85404800-85405200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr9:85404800-85405800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr9:85404800-85408800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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