Variant report

Variant	rs117961802
Chromosome Location	chr10:112746558-112746559
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:112744001..112747517-chr10:112750803..112753417,3	MCF-7	breast:
2	chr10:112746021..112748310-chr10:112757696..112760493,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035602	chr10:112636053-112781413	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1051327	chr10:112650316-112772917	ZNF genes & repeats Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv540774	chr10:112650316-112772917	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv831985	chr10:112652089-112803103	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv1048809	chr10:112683822-112781413	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
6	nsv1042020	chr10:112686323-112795159	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
7	nsv1035422	chr10:112724159-112764594	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases
8	nsv1048444	chr10:112724159-112795159	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
9	nsv1036202	chr10:112726834-112781413	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
10	nsv1051595	chr10:112730022-112789048	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
11	esv3421323	chr10:112745962-112750560	ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:112700600-112764000	Weak transcription	Placenta	Placenta
2	chr10:112702400-112754800	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr10:112705200-112789800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr10:112707200-112755000	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr10:112707200-112784200	Weak transcription	Left Ventricle	heart
6	chr10:112709000-112760000	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr10:112712600-112751200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr10:112712600-112755000	Weak transcription	Fetal Thymus	thymus
9	chr10:112712800-112751600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr10:112719400-112760800	Weak transcription	Fetal Muscle Leg	muscle
11	chr10:112719800-112759200	Weak transcription	Fetal Lung	lung
12	chr10:112723200-112783000	Weak transcription	Small Intestine	intestine
13	chr10:112724600-112748600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr10:112724800-112746600	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr10:112724800-112760200	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr10:112726600-112764000	Weak transcription	HUVEC	blood vessel
17	chr10:112727400-112764400	Weak transcription	Adipose Nuclei	Adipose
18	chr10:112727600-112748800	Weak transcription	NHDF-Ad	bronchial
19	chr10:112728200-112748400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr10:112732400-112763800	Weak transcription	Fetal Muscle Trunk	muscle
21	chr10:112732600-112748400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr10:112732600-112789400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr10:112732800-112746600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr10:112732800-112755000	Weak transcription	Fetal Intestine Large	intestine
25	chr10:112732800-112782800	Weak transcription	Esophagus	oesophagus
26	chr10:112732800-112789400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr10:112736400-112752000	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr10:112737600-112751800	Weak transcription	Brain Substantia Nigra	brain
29	chr10:112738000-112782800	Weak transcription	Rectal Smooth Muscle	rectum
30	chr10:112738200-112784600	Weak transcription	Ovary	ovary
31	chr10:112738400-112779400	Weak transcription	HepG2	liver
32	chr10:112738600-112748400	Weak transcription	NHLF	lung
33	chr10:112738600-112748800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr10:112738600-112751600	Weak transcription	HSMMtube	muscle
35	chr10:112738600-112752800	Weak transcription	Brain Hippocampus Middle	brain
36	chr10:112739000-112751200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr10:112739200-112748400	Weak transcription	HSMM	muscle
38	chr10:112739200-112752200	Weak transcription	NH-A	brain
39	chr10:112739200-112774400	Weak transcription	Gastric	stomach
40	chr10:112739400-112764400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr10:112739600-112769000	Weak transcription	Fetal Kidney	kidney
42	chr10:112739800-112748600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr10:112740000-112755000	Weak transcription	Aorta	Aorta
44	chr10:112740400-112746600	Weak transcription	Monocytes-CD14+_RO01746	blood
45	chr10:112740400-112791800	Weak transcription	Colon Smooth Muscle	Colon
46	chr10:112740600-112761000	Weak transcription	Primary neutrophils fromperipheralblood	blood
47	chr10:112740800-112746600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr10:112740800-112752800	Weak transcription	Thymus	Thymus
49	chr10:112741000-112756000	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr10:112741200-112748800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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