Variant report

Variant	rs117984661
Chromosome Location	chr1:113220177-113220178
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:113219322..113221022-chr1:113234172..113236829,2	K562	blood:
2	chr1:113215712..113221627-chr1:113253708..113259381,5	MCF-7	breast:
3	chr1:113158395..113164969-chr1:113214433..113222934,24	MCF-7	breast:
4	chr1:113216623..113219353-chr1:113219400..113223773,8	MCF-7	breast:
5	chr1:113217617..113223835-chr1:113226384..113230990,8	MCF-7	breast:
6	chr1:113160799..113166409-chr1:113215716..113220433,9	K562	blood:
7	chr1:113214002..113222947-chr1:113236890..113251579,47	MCF-7	breast:
8	chr1:113214590..113222957-chr1:113244863..113253590,39	MCF-7	breast:
9	chr1:113157097..113164348-chr1:113214570..113220795,12	MCF-7	breast:
10	chr1:113214866..113222565-chr1:113237012..113253952,54	K562	blood:

No data

Variant related genes	Relation type
ENSG00000261595	Chromatin interaction
ENSG00000271810	Chromatin interaction
ENSG00000155367	Chromatin interaction
ENSG00000116489	Chromatin interaction
ENSG00000007341	Chromatin interaction
ENSG00000225075	Chromatin interaction
ENSG00000155366	Chromatin interaction
ENSG00000155363	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv13370	chr1:112693290-113246263	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv1002971	chr1:112924725-113740584	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	166 gene(s)	inside rSNPs	diseases
3	nsv535059	chr1:112924725-113740584	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	166 gene(s)	inside rSNPs	diseases
4	nsv1010276	chr1:113123932-113740584	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	158 gene(s)	inside rSNPs	diseases
5	nsv533295	chr1:113167645-113589588	Flanking Active TSS Active TSS Strong transcription Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
6	nsv1012119	chr1:113214869-113759081	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
7	nsv535060	chr1:113214869-113759081	Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
8	esv13773	chr1:113220144-113225122	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:113218400-113221000	Enhancers	Spleen	Spleen
2	chr1:113218400-113230200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr1:113218400-113230400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr1:113218400-113234200	Weak transcription	Aorta	Aorta
5	chr1:113218600-113220200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
6	chr1:113218600-113220200	Enhancers	Thymus	Thymus
7	chr1:113218600-113230200	Weak transcription	Lung	lung
8	chr1:113218600-113232200	Weak transcription	Ovary	ovary
9	chr1:113218600-113235000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr1:113218600-113235400	Weak transcription	HSMM	muscle
11	chr1:113218600-113240800	Weak transcription	Right Atrium	heart
12	chr1:113218800-113220400	Enhancers	Fetal Intestine Small	intestine
13	chr1:113218800-113220800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr1:113218800-113220800	Weak transcription	Brain Angular Gyrus	brain
15	chr1:113218800-113221000	Enhancers	Primary T helper cells fromperipheralblood	blood
16	chr1:113218800-113221200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr1:113218800-113221200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr1:113218800-113221400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
19	chr1:113218800-113222200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chr1:113218800-113222800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr1:113218800-113229200	Weak transcription	Placenta	Placenta
22	chr1:113218800-113230000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr1:113218800-113230000	Weak transcription	Fetal Muscle Trunk	muscle
24	chr1:113218800-113230200	Weak transcription	Left Ventricle	heart
25	chr1:113218800-113230400	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr1:113218800-113230600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr1:113218800-113232200	Weak transcription	Colonic Mucosa	Colon
28	chr1:113218800-113232400	Weak transcription	Brain Substantia Nigra	brain
29	chr1:113218800-113234200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr1:113219000-113220400	Enhancers	GM12878-XiMat	blood
31	chr1:113219000-113221400	Enhancers	Primary T helper cells PMA-I stimulated	--
32	chr1:113219000-113222000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr1:113219000-113223400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr1:113219000-113228600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr1:113219000-113228800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr1:113219000-113228800	Weak transcription	Osteobl	bone
37	chr1:113219000-113230200	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr1:113219000-113230600	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr1:113219000-113231400	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr1:113219000-113232000	Weak transcription	Hela-S3	cervix
41	chr1:113219000-113232200	Weak transcription	Small Intestine	intestine
42	chr1:113219000-113232400	Weak transcription	Brain Anterior Caudate	brain
43	chr1:113219000-113234400	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr1:113219000-113235400	Weak transcription	A549	lung
45	chr1:113219000-113242200	Weak transcription	NHDF-Ad	bronchial
46	chr1:113219000-113243800	Weak transcription	Fetal Brain Male	brain
47	chr1:113219200-113220600	Strong transcription	Fetal Lung	lung
48	chr1:113219200-113221200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
49	chr1:113219200-113221400	Enhancers	HepG2	liver
50	chr1:113219200-113224000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links