Variant report

Variant	rs11799361
Chromosome Location	chr1:174910729-174910730
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:174909477..174911004-chr1:174913375..174915350,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11802711	0.91[AFR][1000 genomes]
rs59531493	1.00[EUR][1000 genomes]
rs6701968	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755184	chr1:174388343-174970343	Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
2	esv1794782	chr1:174900761-174925112	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:174874200-174938200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr1:174876800-174933600	Weak transcription	Aorta	Aorta
3	chr1:174886400-174911600	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr1:174899800-174915200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr1:174900800-174911000	Weak transcription	Brain Angular Gyrus	brain
6	chr1:174901000-174922200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr1:174903800-174911000	Strong transcription	HUES48 Cell Line	embryonic stem cell
8	chr1:174905800-174911600	Weak transcription	Primary B cells from peripheral blood	blood
9	chr1:174907600-174910800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
10	chr1:174908000-174911200	Weak transcription	Brain Cingulate Gyrus	brain
11	chr1:174908000-174911200	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr1:174908000-174911200	Weak transcription	Duodenum Mucosa	Duodenum
13	chr1:174908000-174911600	Weak transcription	Adipose Nuclei	Adipose
14	chr1:174908000-174911800	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr1:174908000-174911800	Weak transcription	Fetal Lung	lung
16	chr1:174908000-174914600	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr1:174908000-174926600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr1:174908000-174932400	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr1:174908200-174911000	Weak transcription	Liver	Liver
20	chr1:174908200-174911200	Weak transcription	Brain Hippocampus Middle	brain
21	chr1:174908200-174911600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr1:174908200-174911600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr1:174908200-174914000	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr1:174908200-174914200	Weak transcription	Small Intestine	intestine
25	chr1:174908200-174914800	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr1:174908200-174915200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr1:174908200-174924200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr1:174908400-174912600	Strong transcription	H1 Cell Line	embryonic stem cell
29	chr1:174908600-174911400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
30	chr1:174908600-174911400	Enhancers	Monocytes-CD14+_RO01746	blood
31	chr1:174908600-174911600	Enhancers	Primary neutrophils fromperipheralblood	blood
32	chr1:174908600-174927400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr1:174908800-174911400	Weak transcription	Primary hematopoietic stem cells	blood
34	chr1:174908800-174911600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr1:174908800-174932200	Weak transcription	Primary T cells from cord blood	blood
36	chr1:174909200-174911800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr1:174909600-174912400	Enhancers	Pancreatic Islets	Pancreatic Islet
38	chr1:174909800-174910800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
39	chr1:174909800-174913800	Enhancers	Primary monocytes fromperipheralblood	blood
40	chr1:174910000-174910800	Enhancers	Pancreas	Pancrea
41	chr1:174910000-174912400	Enhancers	Fetal Intestine Small	intestine
42	chr1:174910000-174916000	Enhancers	Fetal Intestine Large	intestine
43	chr1:174910200-174911200	Weak transcription	Right Atrium	heart
44	chr1:174910200-174911800	Weak transcription	Fetal Muscle Leg	muscle
45	chr1:174910200-174911800	Weak transcription	Placenta	Placenta
46	chr1:174910400-174911200	Strong transcription	HUES64 Cell Line	embryonic stem cell
47	chr1:174910400-174911200	Weak transcription	Stomach Mucosa	stomach
48	chr1:174910400-174911400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
49	chr1:174910400-174911600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr1:174910400-174911800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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