Variant report

Variant	rs11799804
Chromosome Location	chr1:9685599-9685600
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11799995	1.00[AMR][1000 genomes]
rs11800060	1.00[AMR][1000 genomes]
rs74051558	1.00[AMR][1000 genomes]
rs74051559	1.00[AMR][1000 genomes]
rs7518144	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931984	chr1:8879337-9694749	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	570 gene(s)	inside rSNPs	diseases
2	esv3385337	chr1:9105242-10082223	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	549 gene(s)	inside rSNPs	diseases
3	nsv1013224	chr1:9441040-9699768	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
4	nsv871610	chr1:9655795-10008221	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
5	esv3417409	chr1:9683992-10241703	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:9657200-9697600	Weak transcription	Right Atrium	heart
2	chr1:9671800-9686200	Weak transcription	Primary T cells from cord blood	blood
3	chr1:9674200-9685800	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr1:9674200-9686200	Weak transcription	Dnd41	blood
5	chr1:9674200-9687000	Weak transcription	Right Ventricle	heart
6	chr1:9675800-9687000	Weak transcription	Ovary	ovary
7	chr1:9679600-9686000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr1:9681400-9686000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr1:9683000-9686200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr1:9683200-9685800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr1:9684200-9686400	Enhancers	Primary B cells from peripheral blood	blood
12	chr1:9684200-9686800	Enhancers	Primary B cells from cord blood	blood
13	chr1:9684400-9685800	Enhancers	GM12878-XiMat	blood
14	chr1:9684600-9685600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr1:9684800-9685800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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