Variant report

Variant	rs11800333
Chromosome Location	chr1:180872760-180872761
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10914096	0.80[CEU][hapmap]
rs11812056	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2944259	0.84[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs2944262	0.90[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs3002113	0.90[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs3002114	0.85[CEU][hapmap]
rs3002115	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs3002116	0.89[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs3002121	1.00[JPT][hapmap]
rs3002123	0.89[CEU][hapmap]
rs35070801	0.93[ASN][1000 genomes]
rs6659049	0.80[CEU][hapmap]
rs6672415	0.86[CHB][hapmap];0.93[ASN][1000 genomes]
rs6682974	0.90[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs7536392	1.00[CHB][hapmap]
rs7548318	0.89[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs7550031	0.90[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs9425881	0.90[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014404	chr1:180770155-181090200	Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	97 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:180805800-180881000	Weak transcription	Aorta	Aorta
2	chr1:180824000-180880800	Weak transcription	Right Ventricle	heart
3	chr1:180847400-180875400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr1:180861200-180880800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr1:180868000-180878600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr1:180868400-180878400	Weak transcription	Fetal Lung	lung
7	chr1:180868800-180879400	Weak transcription	Fetal Stomach	stomach
8	chr1:180868800-180880400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr1:180868800-180881000	Weak transcription	Right Atrium	heart
10	chr1:180869200-180877400	Weak transcription	Fetal Muscle Leg	muscle
11	chr1:180869400-180875800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr1:180869600-180881000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr1:180869800-180880800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr1:180870800-180880600	Weak transcription	Brain Germinal Matrix	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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