Variant report

Variant	rs11801001
Chromosome Location	chr1:56116739-56116740
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1039294	0.92[CEU][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10493193	0.92[CEU][hapmap]
rs10493194	0.92[CEU][hapmap]
rs10493195	0.92[CEU][hapmap]
rs11206626	0.92[CEU][hapmap]
rs11206635	0.84[CEU][hapmap]
rs11206649	0.92[CEU][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11805740	0.84[CEU][hapmap]
rs12116670	0.92[CEU][hapmap]
rs12117758	0.92[CEU][hapmap]
rs12124658	0.91[EUR][1000 genomes]
rs12125730	0.90[CEU][hapmap]
rs12139482	0.92[CEU][hapmap]
rs17418048	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17418151	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17418627	1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17452287	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4412634	1.00[JPT][hapmap]
rs4575120	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs58623222	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6588567	0.92[CEU][hapmap]
rs6670673	0.92[CEU][hapmap]
rs6680818	0.92[CEU][hapmap]
rs6681925	0.92[CEU][hapmap]
rs6694786	0.84[CEU][hapmap]
rs7519540	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7548272	0.92[CEU][hapmap]
rs7549716	0.92[CEU][hapmap]
rs7550575	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs769989	0.92[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461617	chr1:56055190-56123510	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv546303	chr1:56055190-56123510	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1014866	chr1:56059054-56129092	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv526148	chr1:56101597-56146450	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56115800-56117200	Enhancers	Aorta	Aorta
2	chr1:56116000-56116800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr1:56116200-56117800	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr1:56116400-56120400	Weak transcription	Fetal Muscle Leg	muscle
5	chr1:56116600-56119400	Weak transcription	Ovary	ovary
6	chr1:56116600-56119600	Weak transcription	Psoas Muscle	Psoas

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links