Variant report

Variant	rs11801342
Chromosome Location	chr1:186069800-186069801
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11801652	0.84[LWK][hapmap]
rs11809362	0.84[LWK][hapmap]
rs16824824	1.00[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3424090	chr1:185679718-186270877	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:186009400-186078000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr1:186046400-186135200	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr1:186052200-186118200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr1:186057400-186083800	Weak transcription	Adipose Nuclei	Adipose
5	chr1:186057600-186077800	Weak transcription	Liver	Liver
6	chr1:186057600-186078000	Weak transcription	Aorta	Aorta
7	chr1:186063800-186071200	Weak transcription	Osteobl	bone
8	chr1:186064000-186094200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr1:186064600-186092000	Weak transcription	Left Ventricle	heart
10	chr1:186064600-186113200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr1:186065200-186093800	Weak transcription	Spleen	Spleen
12	chr1:186066200-186078200	Weak transcription	Fetal Lung	lung
13	chr1:186067000-186070200	Weak transcription	NHDF-Ad	bronchial
14	chr1:186068000-186069800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr1:186069000-186070000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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