Variant report

Variant	rs11801405
Chromosome Location	chr1:194156759-194156760
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 99 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs10737641	1.00[ASN][1000 genomes]
rs11800312	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11801080	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11801404	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11801910	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11803717	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11804024	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11805534	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11807301	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11808423	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11808713	1.00[ASN][1000 genomes]
rs11811914	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16836475	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16836478	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16836495	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16836498	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16836500	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16836507	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16836512	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16836541	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16836558	1.00[ASN][1000 genomes]
rs16836606	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16836613	1.00[ASN][1000 genomes]
rs16836616	1.00[ASN][1000 genomes]
rs16836713	1.00[ASN][1000 genomes]
rs16865255	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17266121	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17838232	1.00[ASN][1000 genomes]
rs1830903	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1972217	1.00[ASN][1000 genomes]
rs28415984	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs302230	1.00[ASN][1000 genomes]
rs34174975	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34857818	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35549565	1.00[ASN][1000 genomes]
rs35677097	1.00[ASN][1000 genomes]
rs3898197	1.00[CHB][hapmap]
rs4130301	1.00[CHB][hapmap]
rs4276898	1.00[ASN][1000 genomes]
rs4307546	1.00[ASN][1000 genomes]
rs57371721	1.00[ASN][1000 genomes]
rs57449496	1.00[ASN][1000 genomes]
rs57469728	1.00[ASN][1000 genomes]
rs58351229	1.00[ASN][1000 genomes]
rs59038468	1.00[ASN][1000 genomes]
rs59286844	1.00[ASN][1000 genomes]
rs59453594	1.00[ASN][1000 genomes]
rs59612467	1.00[ASN][1000 genomes]
rs60389535	1.00[ASN][1000 genomes]
rs62641674	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62641676	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62641677	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62641678	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6664256	1.00[ASN][1000 genomes]
rs6675563	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6675577	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6676105	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6678215	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6678218	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6679169	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6679177	1.00[ASN][1000 genomes]
rs6680245	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6680934	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6681145	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6681155	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6685697	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6687295	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6689209	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6690877	1.00[ASN][1000 genomes]
rs6703450	1.00[ASN][1000 genomes]
rs6704202	1.00[ASN][1000 genomes]
rs73052941	1.00[ASN][1000 genomes]
rs73052964	1.00[ASN][1000 genomes]
rs73052965	1.00[ASN][1000 genomes]
rs73052967	1.00[ASN][1000 genomes]
rs73052969	1.00[ASN][1000 genomes]
rs73052970	1.00[ASN][1000 genomes]
rs73052976	1.00[ASN][1000 genomes]
rs73055100	1.00[ASN][1000 genomes]
rs73056930	1.00[ASN][1000 genomes]
rs73056932	1.00[ASN][1000 genomes]
rs73056949	1.00[ASN][1000 genomes]
rs73056956	1.00[ASN][1000 genomes]
rs73056964	1.00[ASN][1000 genomes]
rs73056968	1.00[ASN][1000 genomes]
rs73056971	1.00[ASN][1000 genomes]
rs73056999	1.00[ASN][1000 genomes]
rs73060841	1.00[ASN][1000 genomes]
rs7513393	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7529891	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7534003	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7542938	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008266	chr1:193550185-194481053	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv872834	chr1:193889533-194482304	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1001872	chr1:194030479-194288016	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv832181	chr1:194089117-194255615	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv872837	chr1:194106280-194221509	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1004338	chr1:194143315-194381135	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv946553	chr1:194156703-194159427	Strong transcription Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:194151400-194158600	Weak transcription	Thymus	Thymus

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