Variant report

Variant	rs11801577
Chromosome Location	chr1:184406491-184406492
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:184397306..184399286-chr1:184405791..184407775,2	MCF-7	breast:
2	chr1:184405912..184408015-chr1:184409739..184411980,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1547608	0.94[AFR][1000 genomes]
rs16823155	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34282348	0.85[AFR][1000 genomes]
rs35901887	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530079	chr1:183797938-184639971	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	esv2756618	chr1:184393343-184674343	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:184383800-184412400	Weak transcription	Fetal Stomach	stomach
2	chr1:184390600-184422400	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr1:184392200-184408200	Weak transcription	Esophagus	oesophagus
4	chr1:184395400-184408000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr1:184396000-184412800	Weak transcription	Fetal Muscle Leg	muscle
6	chr1:184396200-184412800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr1:184396200-184418800	Weak transcription	NHEK	skin
8	chr1:184396200-184419000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr1:184396400-184430000	Weak transcription	Spleen	Spleen
10	chr1:184398400-184410200	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr1:184398600-184411400	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr1:184398800-184418800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr1:184400400-184412800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr1:184402400-184406600	Weak transcription	Pancreas	Pancrea
15	chr1:184402600-184417400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr1:184403000-184423600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr1:184403400-184409800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr1:184403800-184411400	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr1:184404200-184407400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr1:184404800-184412800	Weak transcription	Left Ventricle	heart
21	chr1:184405000-184407000	Enhancers	Fetal Intestine Large	intestine
22	chr1:184405000-184407800	Enhancers	Psoas Muscle	Psoas
23	chr1:184405200-184407800	Enhancers	Rectal Mucosa Donor 31	rectum
24	chr1:184405400-184408000	Enhancers	Stomach Mucosa	stomach
25	chr1:184405600-184406600	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr1:184405600-184407400	Enhancers	Fetal Intestine Small	intestine
27	chr1:184405600-184407800	Enhancers	Right Ventricle	heart
28	chr1:184405800-184407600	Weak transcription	Lung	lung
29	chr1:184406000-184422200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr1:184406200-184406600	Flanking Active TSS	Duodenum Mucosa	Duodenum
31	chr1:184406400-184408000	Enhancers	Right Atrium	heart
32	chr1:184406400-184412200	Weak transcription	Rectal Mucosa Donor 29	rectum

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