Variant report

Variant	rs11802310
Chromosome Location	chr1:151484871-151484872
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:24)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:24 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:151484738..151486460-chr1:151566819..151569782,2	MCF-7	breast:
2	chr1:151428938..151433041-chr1:151480813..151490135,53	MCF-7	breast:
3	chr1:151481429..151491154-chr1:151502501..151517487,49	MCF-7	breast:
4	chr1:151481542..151488437-chr1:151515636..151525415,14	MCF-7	breast:
5	chr1:151482538..151486660-chr1:151496961..151502245,5	MCF-7	breast:
6	chr1:11967458..11970072-chr1:151484306..151486601,2	MCF-7	breast:
7	chr1:151483025..151485659-chr1:152019731..152022240,2	MCF-7	breast:
8	chr1:151410006..151411683-chr1:151482922..151485531,2	MCF-7	breast:
9	chr1:151483091..151485437-chr1:151490674..151493564,2	K562	blood:
10	chr1:151477348..151494376-chr1:151504804..151515249,50	MCF-7	breast:
11	chr1:151461959..151463906-chr1:151484479..151486691,3	MCF-7	breast:
12	chr1:151414283..151420812-chr1:151481565..151487481,13	MCF-7	breast:
13	chr1:151030533..151032242-chr1:151484532..151486618,2	MCF-7	breast:
14	chr1:151253961..151255761-chr1:151484819..151487293,2	MCF-7	breast:
15	chr1:151483462..151487382-chr1:151518217..151524477,9	MCF-7	breast:
16	chr1:151414651..151422317-chr1:151482271..151486624,12	MCF-7	breast:
17	chr1:150958810..150961134-chr1:151484440..151487024,2	MCF-7	breast:
18	chr1:151484691..151486621-chr1:151962085..151964758,2	MCF-7	breast:
19	chr1:151042074..151044319-chr1:151484025..151486310,2	MCF-7	breast:
20	chr1:151170179..151172284-chr1:151482238..151485195,2	MCF-7	breast:
21	chr1:151484288..151487227-chr1:151592351..151595029,2	MCF-7	breast:
22	chr1:151484241..151487066-chr1:151733947..151738739,4	MCF-7	breast:
23	chr1:151427202..151436068-chr1:151477865..151490153,60	MCF-7	breast:
24	chr1:151483888..151486262-chr1:151734424..151737312,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000143398	Chromatin interaction
ENSG00000232536	Chromatin interaction
ENSG00000197622	Chromatin interaction
ENSG00000143367	Chromatin interaction
ENSG00000163191	Chromatin interaction
ENSG00000232671	Chromatin interaction
ENSG00000238711	Chromatin interaction
ENSG00000207606	Chromatin interaction
ENSG00000143442	Chromatin interaction
ENSG00000143458	Chromatin interaction
ENSG00000143375	Chromatin interaction
ENSG00000143373	Chromatin interaction
ENSG00000199347	Chromatin interaction
ENSG00000143450	Chromatin interaction
ENSG00000201801	Chromatin interaction
ENSG00000143436	Chromatin interaction
ENSG00000232937	Chromatin interaction
ENSG00000252840	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs34618787	1.00[AMR][1000 genomes]
rs60710240	1.00[AMR][1000 genomes]
rs6673041	1.00[AMR][1000 genomes]
rs6674647	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72997927	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72997933	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72997937	1.00[AMR][1000 genomes]
rs72997974	1.00[AMR][1000 genomes]
rs72997976	1.00[AMR][1000 genomes]
rs72997981	1.00[AMR][1000 genomes]
rs7533075	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916272	chr1:150961809-151557253	Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	219 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:151482400-151485000	Active TSS	iPS-15b Cell Line	embryonic stem cell
2	chr1:151482400-151486200	Active TSS	H9 Cell Line	embryonic stem cell
3	chr1:151482600-151485000	Active TSS	ES-I3 Cell Line	embryonic stem cell
4	chr1:151482800-151485000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr1:151482800-151485000	Active TSS	Pancreatic Islets	Pancreatic Islet
6	chr1:151482800-151486000	Active TSS	Rectal Smooth Muscle	rectum
7	chr1:151483000-151485000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr1:151483200-151485000	Active TSS	HUES64 Cell Line	embryonic stem cell
9	chr1:151483200-151485400	Active TSS	H1 Cell Line	embryonic stem cell
10	chr1:151483200-151485800	Active TSS	Small Intestine	intestine
11	chr1:151483200-151486200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr1:151483400-151485000	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr1:151483400-151485000	Active TSS	Lung	lung
14	chr1:151483400-151485400	Active TSS	Gastric	stomach
15	chr1:151484000-151485000	Flanking Active TSS	Primary B cells from cord blood	blood
16	chr1:151484000-151485000	Flanking Active TSS	Primary hematopoietic stem cells	blood
17	chr1:151484000-151485000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
18	chr1:151484000-151485000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
19	chr1:151484000-151485000	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr1:151484000-151485000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr1:151484000-151485000	Flanking Active TSS	Hela-S3	cervix
22	chr1:151484000-151485000	Flanking Bivalent TSS/Enh	HepG2	liver
23	chr1:151484000-151485200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
24	chr1:151484000-151485200	Flanking Active TSS	Stomach Smooth Muscle	stomach
25	chr1:151484000-151485200	Flanking Active TSS	Dnd41	blood
26	chr1:151484000-151485400	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
27	chr1:151484000-151485800	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr1:151484200-151485000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr1:151484200-151485200	Flanking Active TSS	Colonic Mucosa	Colon
30	chr1:151484200-151485200	Flanking Active TSS	Duodenum Mucosa	Duodenum
31	chr1:151484200-151485200	Flanking Bivalent TSS/Enh	Duodenum Smooth Muscle	Duodenum
32	chr1:151484200-151485200	Flanking Active TSS	GM12878-XiMat	blood
33	chr1:151484200-151485400	Flanking Active TSS	Stomach Mucosa	stomach
34	chr1:151484200-151485600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
35	chr1:151484200-151485800	Flanking Active TSS	NHEK	skin
36	chr1:151484200-151486400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr1:151484200-151486600	Bivalent/Poised TSS	Fetal Kidney	kidney
38	chr1:151484200-151487400	Flanking Active TSS	Liver	Liver
39	chr1:151484400-151485000	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
40	chr1:151484400-151485000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
41	chr1:151484400-151485000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
42	chr1:151484400-151485000	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr1:151484400-151485000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr1:151484400-151485000	Flanking Active TSS	Brain Hippocampus Middle	brain
45	chr1:151484400-151485000	Flanking Active TSS	Fetal Brain Female	brain
46	chr1:151484400-151485000	Bivalent/Poised TSS	Fetal Intestine Small	intestine
47	chr1:151484400-151485200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
48	chr1:151484400-151485200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
49	chr1:151484400-151485600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
50	chr1:151484400-151485800	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell

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