Variant report

Variant	rs11802488
Chromosome Location	chr1:165908481-165908482
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12062043	1.00[EUR][1000 genomes]
rs12079130	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16853251	1.00[EUR][1000 genomes]
rs1768902	1.00[EUR][1000 genomes]
rs28522870	1.00[EUR][1000 genomes]
rs522854	1.00[EUR][1000 genomes]
rs60415933	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872509	chr1:165885147-165917109	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv520206	chr1:165903962-165913774	Weak transcription Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165904400-165912000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:165906800-165910600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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