Variant report

Variant	rs11803086
Chromosome Location	chr1:247488036-247488037
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:247479235..247481801-chr1:247485562..247488525,3	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11804535	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11809277	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6682130	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6702706	1.00[AMR][1000 genomes]
rs7541808	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005208	chr1:247037441-247597975	Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	esv3411043	chr1:247382851-247517729	Genic enhancers Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	n/a
3	esv3378684	chr1:247382994-247518438	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	n/a
4	nsv833137	chr1:247437317-247607428	Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	n/a
5	esv1848384	chr1:247485654-247495666	Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	n/a
6	nsv873439	chr1:247486736-247549220	Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:247456000-247493400	Weak transcription	Right Atrium	heart
2	chr1:247460400-247493400	Strong transcription	Fetal Muscle Leg	muscle
3	chr1:247460800-247491800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
4	chr1:247460800-247493400	Strong transcription	Fetal Muscle Trunk	muscle
5	chr1:247461200-247488200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr1:247461400-247493800	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr1:247463000-247493600	Strong transcription	HUES6 Cell Line	embryonic stem cell
8	chr1:247463200-247493400	Strong transcription	HUES48 Cell Line	embryonic stem cell
9	chr1:247464800-247493400	Strong transcription	Fetal Stomach	stomach
10	chr1:247465200-247493400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr1:247467600-247493800	Weak transcription	Stomach Mucosa	stomach
12	chr1:247468400-247494000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr1:247469000-247493600	Weak transcription	Psoas Muscle	Psoas
14	chr1:247469400-247493800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr1:247471800-247493400	Weak transcription	Fetal Heart	heart
16	chr1:247472800-247493400	Weak transcription	Small Intestine	intestine
17	chr1:247474000-247488200	Weak transcription	Gastric	stomach
18	chr1:247476600-247491400	Strong transcription	Dnd41	blood
19	chr1:247476600-247494000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr1:247479800-247493000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr1:247480000-247493600	Weak transcription	NHDF-Ad	bronchial
22	chr1:247482000-247492600	Strong transcription	Liver	Liver
23	chr1:247482200-247488600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr1:247482400-247493600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr1:247482600-247493400	Strong transcription	H1 Cell Line	embryonic stem cell
26	chr1:247482600-247493400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr1:247482800-247492400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr1:247482800-247493400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr1:247482800-247493400	Strong transcription	A549	lung
30	chr1:247482800-247493600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr1:247483000-247488200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr1:247483000-247488200	Strong transcription	Left Ventricle	heart
33	chr1:247483000-247493200	Strong transcription	Brain Germinal Matrix	brain
34	chr1:247483000-247493200	Strong transcription	Fetal Brain Female	brain
35	chr1:247483200-247488400	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr1:247483200-247489200	Strong transcription	Hela-S3	cervix
37	chr1:247483400-247488200	Strong transcription	H9 Cell Line	embryonic stem cell
38	chr1:247483400-247488600	Strong transcription	Stomach Smooth Muscle	stomach
39	chr1:247483400-247489000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr1:247483400-247490000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr1:247483400-247493000	Strong transcription	Skeletal Muscle Male	skeletal muscle
42	chr1:247483400-247493200	Strong transcription	iPS-15b Cell Line	embryonic stem cell
43	chr1:247483600-247488200	Strong transcription	Cortex derived primary cultured neurospheres	brain
44	chr1:247483600-247488400	Strong transcription	Rectal Mucosa Donor 29	rectum
45	chr1:247484200-247488800	Strong transcription	Brain Anterior Caudate	brain
46	chr1:247484600-247493400	Weak transcription	Ovary	ovary
47	chr1:247485600-247491400	Weak transcription	Fetal Brain Male	brain
48	chr1:247485800-247491400	Weak transcription	Fetal Kidney	kidney
49	chr1:247486000-247489000	Genic enhancers	iPS-18 Cell Line	embryonic stem cell
50	chr1:247486000-247489000	Weak transcription	NHEK	skin

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