Variant report

Variant	rs11803276
Chromosome Location	chr1:165571048-165571049
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:165565977..165568416-chr1:165569546..165571899,2	K562	blood:
2	chr1:165569088..165572600-chr1:165598003..165601699,3	K562	blood:
3	chr1:165570598..165571161-chr1:165885123..165885647,2	K562	blood:
4	chr1:165570586..165571293-chr1:165883467..165884080,3	MCF-7	breast:
5	chr1:165569692..165572245-chr1:165736970..165738543,2	K562	blood:
6	chr1:165570516..165571146-chr1:165883471..165884311,2	MCF-7	breast:
7	chr1:165570621..165571411-chr1:165655068..165656040,3	MCF-7	breast:
8	chr1:165570871..165572567-chr1:165795874..165797856,2	K562	blood:
9	chr1:165568647..165571505-chr1:165795399..165798198,2	MCF-7	breast:
10	chr1:165569014..165571063-chr1:165883495..165885234,2	K562	blood:
11	chr1:165570583..165571677-chr1:165883154..165884275,9	K562	blood:

No data

Variant related genes	Relation type
ENSG00000143179	Chromatin interaction
ENSG00000143183	Chromatin interaction
ENSG00000236206	Chromatin interaction
ENSG00000143198	Chromatin interaction
ENSG00000224358	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11801044	1.00[ASN][1000 genomes]
rs11801981	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11802672	1.00[ASN][1000 genomes]
rs11806754	1.00[ASN][1000 genomes]
rs16847487	1.00[ASN][1000 genomes]
rs16847544	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57256442	0.89[ASN][1000 genomes]
rs58045866	1.00[ASN][1000 genomes]
rs59033716	1.00[ASN][1000 genomes]
rs61557603	0.89[ASN][1000 genomes]
rs61804068	0.89[ASN][1000 genomes]
rs61804069	0.89[ASN][1000 genomes]
rs6682771	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6695758	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72696026	1.00[ASN][1000 genomes]
rs72696027	1.00[ASN][1000 genomes]
rs72696028	1.00[ASN][1000 genomes]
rs72696029	1.00[ASN][1000 genomes]
rs7550682	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429902	chr1:165531342-165574342	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165568000-165572800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:165568000-165574800	Weak transcription	Right Atrium	heart
3	chr1:165568200-165579600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr1:165569000-165571200	Weak transcription	Osteobl	bone
5	chr1:165569800-165571200	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr1:165569800-165571400	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr1:165569800-165571400	Enhancers	Duodenum Mucosa	Duodenum
8	chr1:165570600-165571400	Enhancers	Stomach Mucosa	stomach
9	chr1:165570800-165571200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
10	chr1:165570800-165571200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr1:165570800-165571200	Enhancers	Brain Anterior Caudate	brain
12	chr1:165570800-165571200	Enhancers	Brain Substantia Nigra	brain
13	chr1:165570800-165571200	Active TSS	Pancreatic Islets	Pancreatic Islet
14	chr1:165570800-165571200	Enhancers	Rectal Mucosa Donor 31	rectum
15	chr1:165570800-165571200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
16	chr1:165570800-165571200	Enhancers	GM12878-XiMat	blood
17	chr1:165570800-165571400	Active TSS	ES-I3 Cell Line	embryonic stem cell
18	chr1:165570800-165571400	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr1:165570800-165571400	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr1:165570800-165571400	Enhancers	Primary B cells from peripheral blood	blood
21	chr1:165570800-165571400	Enhancers	Brain Inferior Temporal Lobe	brain
22	chr1:165570800-165571400	Enhancers	Colon Smooth Muscle	Colon
23	chr1:165570800-165571400	Enhancers	Fetal Intestine Small	intestine
24	chr1:165570800-165571400	Enhancers	Rectal Mucosa Donor 29	rectum
25	chr1:165570800-165571400	Enhancers	A549	lung
26	chr1:165570800-165571400	Flanking Active TSS	K562	blood
27	chr1:165571000-165571200	Enhancers	Primary T cells fromperipheralblood	blood
28	chr1:165571000-165571200	Flanking Active TSS	Liver	Liver
29	chr1:165571000-165571200	Flanking Active TSS	NH-A	brain
30	chr1:165571000-165571400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr1:165571000-165571400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr1:165571000-165571400	Enhancers	HUES64 Cell Line	embryonic stem cell
33	chr1:165571000-165571400	Active TSS	iPS-15b Cell Line	embryonic stem cell
34	chr1:165571000-165571400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr1:165571000-165571400	Flanking Active TSS	Adipose Nuclei	Adipose
36	chr1:165571000-165571400	Active TSS	Brain Hippocampus Middle	brain
37	chr1:165571000-165571400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
38	chr1:165571000-165571400	Active TSS	HepG2	liver
39	chr1:165571000-165572600	Weak transcription	Primary T helper cells PMA-I stimulated	--

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