Variant report

Variant	rs11803395
Chromosome Location	chr1:114206358-114206359
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs4839331	0.87[AFR][1000 genomes]
rs6678422	0.87[AFR][1000 genomes]
rs7517631	0.81[AFR][1000 genomes]
rs7533597	0.89[AFR][1000 genomes]
rs7537604	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012324	chr1:114135133-114206843	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv872161	chr1:114162194-114280135	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	esv2752424	chr1:114189958-114712958	Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	96 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:114171600-114241400	Weak transcription	Right Ventricle	heart
2	chr1:114173000-114214400	Weak transcription	Esophagus	oesophagus
3	chr1:114173000-114226800	Weak transcription	Aorta	Aorta
4	chr1:114173800-114214400	Weak transcription	Pancreas	Pancrea
5	chr1:114173800-114236000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr1:114179800-114239600	Weak transcription	Spleen	Spleen
7	chr1:114182000-114219600	Weak transcription	Fetal Kidney	kidney
8	chr1:114182800-114217400	Weak transcription	NHDF-Ad	bronchial
9	chr1:114183000-114235800	Weak transcription	Dnd41	blood
10	chr1:114183400-114215800	Weak transcription	Fetal Lung	lung
11	chr1:114183600-114216400	Weak transcription	A549	lung
12	chr1:114185200-114224400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr1:114185400-114214600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr1:114185400-114228000	Weak transcription	HepG2	liver
15	chr1:114185800-114223600	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr1:114190000-114217600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr1:114190000-114220000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr1:114190200-114214000	Weak transcription	Placenta	Placenta
19	chr1:114194000-114223600	Weak transcription	Left Ventricle	heart
20	chr1:114194200-114215200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr1:114195600-114214400	Weak transcription	Adipose Nuclei	Adipose
22	chr1:114196600-114226400	Weak transcription	Gastric	stomach
23	chr1:114196800-114214400	Weak transcription	Ovary	ovary
24	chr1:114197000-114214400	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr1:114197600-114214600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr1:114200200-114227800	Weak transcription	Stomach Mucosa	stomach
27	chr1:114200400-114214400	Weak transcription	Fetal Muscle Leg	muscle
28	chr1:114200400-114215800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr1:114201600-114219400	Weak transcription	Fetal Heart	heart
30	chr1:114201800-114207000	Strong transcription	Rectal Mucosa Donor 29	rectum
31	chr1:114202000-114241400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr1:114202400-114214000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr1:114202400-114214400	Weak transcription	Lung	lung
34	chr1:114202400-114220000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr1:114202600-114206400	Weak transcription	Liver	Liver
36	chr1:114203000-114214600	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr1:114203000-114232000	Weak transcription	Fetal Brain Female	brain
38	chr1:114203000-114237800	Weak transcription	NH-A	brain
39	chr1:114203200-114211600	Weak transcription	Primary T cells from cord blood	blood
40	chr1:114203200-114213800	Weak transcription	Rectal Mucosa Donor 31	rectum
41	chr1:114203200-114214200	Weak transcription	Duodenum Mucosa	Duodenum
42	chr1:114203200-114224800	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr1:114203200-114232200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr1:114203200-114237600	Weak transcription	Brain Cingulate Gyrus	brain
45	chr1:114203200-114298600	Weak transcription	Fetal Brain Male	brain
46	chr1:114203400-114209000	Weak transcription	Fetal Muscle Trunk	muscle
47	chr1:114203400-114215800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr1:114203400-114217200	Weak transcription	Colonic Mucosa	Colon
49	chr1:114203400-114237800	Weak transcription	Brain Angular Gyrus	brain
50	chr1:114203600-114208600	Weak transcription	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links