Variant report

Variant	rs11803792
Chromosome Location	chr1:151008266-151008267
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:151005028..151012583-chr1:151026392..151034442,13	K562	blood:
2	chr1:150997115..151004935-chr1:151005196..151010372,8	MCF-7	breast:
3	chr1:150979416..150982558-chr1:151006468..151010604,5	MCF-7	breast:
4	chr1:151006355..151008407-chr1:151010213..151012473,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000197622	Chromatin interaction
ENSG00000143409	Chromatin interaction
ENSG00000213190	Chromatin interaction
ENSG00000143363	Chromatin interaction
ENSG00000163141	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11204757	1.00[CEU][hapmap]
rs11204761	1.00[CEU][hapmap]
rs11799858	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11799964	1.00[CEU][hapmap];0.86[LWK][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.83[AFR][1000 genomes]
rs11799977	1.00[CEU][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11804787	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11811879	0.92[YRI][hapmap];1.00[AMR][1000 genomes]
rs12063995	1.00[CEU][hapmap]
rs12094892	1.00[CEU][hapmap]
rs1534058	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1534059	1.00[CEU][hapmap];0.86[LWK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001897	chr1:150743271-151241600	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
2	nsv535158	chr1:150743271-151241600	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
3	nsv522840	chr1:150933723-151347746	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
4	nsv916272	chr1:150961809-151557253	Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	219 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:150982000-151009000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:150989800-151010400	Strong transcription	Fetal Stomach	stomach
3	chr1:150996200-151008400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
4	chr1:150996600-151009200	Strong transcription	Fetal Intestine Large	intestine
5	chr1:150996600-151009800	Strong transcription	Fetal Intestine Small	intestine
6	chr1:150997400-151008400	Strong transcription	Fetal Muscle Trunk	muscle
7	chr1:150997400-151009400	Strong transcription	Fetal Thymus	thymus
8	chr1:150997400-151009800	Strong transcription	Fetal Muscle Leg	muscle
9	chr1:150997600-151008800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr1:150997600-151009400	Strong transcription	Liver	Liver
11	chr1:150997600-151015400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr1:150997600-151019800	Weak transcription	HUVEC	blood vessel
13	chr1:150997800-151008400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr1:150997800-151019800	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr1:150999200-151010000	Strong transcription	Fetal Brain Female	brain
16	chr1:151000000-151019800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr1:151000000-151019800	Weak transcription	NHLF	lung
18	chr1:151000200-151019800	Weak transcription	Small Intestine	intestine
19	chr1:151001600-151009000	Weak transcription	Esophagus	oesophagus
20	chr1:151003000-151011400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr1:151003200-151009400	Strong transcription	Skeletal Muscle Female	skeletal muscle
22	chr1:151003800-151019800	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr1:151004200-151009000	Weak transcription	K562	blood
24	chr1:151004400-151011400	Weak transcription	NHDF-Ad	bronchial
25	chr1:151004400-151015400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
26	chr1:151004400-151019800	Weak transcription	Fetal Kidney	kidney
27	chr1:151005800-151009400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr1:151006000-151008400	Strong transcription	Primary T cells fromperipheralblood	blood
29	chr1:151006000-151008400	Strong transcription	Duodenum Smooth Muscle	Duodenum
30	chr1:151006000-151008400	Strong transcription	Placenta	Placenta
31	chr1:151006000-151008600	Strong transcription	Primary T cells from cord blood	blood
32	chr1:151006200-151008400	Enhancers	Placenta Amnion	Placenta Amnion
33	chr1:151006200-151008400	Strong transcription	Rectal Mucosa Donor 31	rectum
34	chr1:151006200-151008600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr1:151006200-151009000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr1:151006800-151015400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr1:151006800-151019800	Weak transcription	Gastric	stomach
38	chr1:151006800-151019800	Weak transcription	HepG2	liver
39	chr1:151007000-151009200	Weak transcription	HMEC	breast
40	chr1:151007000-151019000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
41	chr1:151007000-151019600	Weak transcription	Colonic Mucosa	Colon
42	chr1:151007200-151008400	Enhancers	Fetal Heart	heart
43	chr1:151007200-151009000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr1:151007200-151009200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr1:151007200-151010600	Weak transcription	GM12878-XiMat	blood
46	chr1:151007200-151019800	Weak transcription	HUES6 Cell Line	embryonic stem cell
47	chr1:151007200-151019800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr1:151007400-151009600	Enhancers	Stomach Mucosa	stomach
49	chr1:151007400-151009800	Weak transcription	Hela-S3	cervix
50	chr1:151007400-151010600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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