Variant report

Variant	rs11804156
Chromosome Location	chr1:9635000-9635001
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:9633719..9635859-chr1:9647624..9649218,2	K562	blood:
2	chr1:9598681..9600930-chr1:9633895..9636058,2	K562	blood:
3	chr1:9553945..9555814-chr1:9634241..9636152,2	K562	blood:

Variant related genes	Relation type
ENSG00000171612	Chromatin interaction
ENSG00000188807	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11811820	1.00[AFR][1000 genomes]
rs56133747	0.82[AFR][1000 genomes]
rs56674651	0.82[AFR][1000 genomes]
rs57585081	0.83[AFR][1000 genomes]
rs7354926	0.93[AFR][1000 genomes]
rs74051540	0.83[AFR][1000 genomes]
rs74051544	0.91[AFR][1000 genomes]
rs74051551	1.00[AFR][1000 genomes]
rs74051552	1.00[AFR][1000 genomes]
rs74051559	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931984	chr1:8879337-9694749	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	570 gene(s)	inside rSNPs	diseases
2	esv3385337	chr1:9105242-10082223	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	549 gene(s)	inside rSNPs	diseases
3	nsv1013224	chr1:9441040-9699768	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
4	nsv464283	chr1:9495571-9677853	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv545363	chr1:9495571-9677853	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
6	nsv945765	chr1:9633634-9639115	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:9616200-9648200	Weak transcription	Esophagus	oesophagus
2	chr1:9616400-9638400	Weak transcription	Pancreas	Pancrea
3	chr1:9616800-9636600	Weak transcription	Gastric	stomach
4	chr1:9617000-9640200	Weak transcription	Placenta	Placenta
5	chr1:9618600-9648200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr1:9619200-9635800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr1:9619200-9635800	Weak transcription	Brain Cingulate Gyrus	brain
8	chr1:9619200-9635800	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr1:9619200-9636000	Weak transcription	Brain Angular Gyrus	brain
10	chr1:9619200-9636000	Weak transcription	Spleen	Spleen
11	chr1:9619200-9648400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr1:9619200-9648400	Weak transcription	Aorta	Aorta
13	chr1:9619200-9648400	Weak transcription	Right Atrium	heart
14	chr1:9619400-9636000	Weak transcription	Brain Substantia Nigra	brain
15	chr1:9619600-9636000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr1:9619800-9639400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr1:9620000-9635000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr1:9620200-9648200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr1:9620200-9648400	Weak transcription	Psoas Muscle	Psoas
20	chr1:9621400-9636200	Weak transcription	Lung	lung
21	chr1:9621600-9648400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr1:9621800-9636200	Weak transcription	Primary T cells fromperipheralblood	blood
23	chr1:9621800-9637400	Weak transcription	Colonic Mucosa	Colon
24	chr1:9622000-9635800	Weak transcription	Brain Hippocampus Middle	brain
25	chr1:9622000-9636000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr1:9622000-9636000	Weak transcription	HMEC	breast
27	chr1:9622000-9636200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr1:9622000-9638800	Weak transcription	Right Ventricle	heart
29	chr1:9622000-9639400	Weak transcription	A549	lung
30	chr1:9622000-9641000	Weak transcription	NHDF-Ad	bronchial
31	chr1:9622000-9648200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr1:9622000-9648200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr1:9622000-9648200	Weak transcription	Fetal Brain Female	brain
34	chr1:9622000-9648200	Weak transcription	Fetal Kidney	kidney
35	chr1:9622000-9648200	Weak transcription	NHLF	lung
36	chr1:9622000-9648400	Weak transcription	Fetal Lung	lung
37	chr1:9622200-9636000	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr1:9622200-9636000	Weak transcription	Osteobl	bone
39	chr1:9622200-9637800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr1:9622200-9648200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
41	chr1:9622200-9648200	Weak transcription	HUVEC	blood vessel
42	chr1:9622200-9648200	Weak transcription	NH-A	brain
43	chr1:9622200-9648800	Weak transcription	Small Intestine	intestine
44	chr1:9622400-9636000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr1:9622400-9636000	Weak transcription	Left Ventricle	heart
46	chr1:9622400-9636000	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr1:9622400-9638800	Weak transcription	Colon Smooth Muscle	Colon
48	chr1:9622400-9638800	Weak transcription	Rectal Smooth Muscle	rectum
49	chr1:9623000-9645800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr1:9624000-9635800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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