Variant report

Variant	rs11804210
Chromosome Location	chr1:184709278-184709279
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:184708584..184710764-chr1:184716187..184718399,2	MCF-7	breast:
2	chr1:184700886..184703045-chr1:184708042..184709740,3	K562	blood:
3	chr1:184708496..184710858-chr1:184733789..184736072,2	K562	blood:
4	chr1:184708169..184713415-chr1:184713456..184716461,4	MCF-7	breast:
5	chr1:184708973..184712904-chr1:184713895..184716754,5	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs4131995	0.83[ASN][1000 genomes]
rs56335635	1.00[ASN][1000 genomes]
rs58395537	0.98[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs60400761	0.99[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60787651	0.96[AFR][1000 genomes]
rs6660367	0.90[ASN][1000 genomes]
rs66640078	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6690603	1.00[ASN][1000 genomes]
rs67386341	0.86[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs7512112	1.00[ASN][1000 genomes]
rs7513276	1.00[ASN][1000 genomes]
rs7537286	0.94[AFR][1000 genomes]
rs7542913	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9286853	0.83[ASN][1000 genomes]
rs9660114	1.00[ASN][1000 genomes]
rs9660352	0.95[ASN][1000 genomes]
rs9661302	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001323	chr1:184525419-185315876	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	nsv535222	chr1:184525419-185315876	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
3	nsv832037	chr1:184568194-184756597	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv917126	chr1:184655366-184902273	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
5	nsv832048	chr1:184660146-184858802	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
6	nsv1010371	chr1:184663898-184709570	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv1009529	chr1:184663898-184731215	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv1001244	chr1:184667198-184715195	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	esv1849889	chr1:184667371-184718601	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv872584	chr1:184678290-184716457	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:184654000-184710800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:184654200-184710000	Weak transcription	Esophagus	oesophagus
3	chr1:184674600-184723000	Weak transcription	Aorta	Aorta
4	chr1:184677600-184723200	Weak transcription	Lung	lung
5	chr1:184678800-184710800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr1:184685000-184721800	Weak transcription	Fetal Heart	heart
7	chr1:184685400-184722800	Weak transcription	Ovary	ovary
8	chr1:184685600-184711200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr1:184685600-184714400	Weak transcription	Brain Substantia Nigra	brain
10	chr1:184685600-184721000	Weak transcription	Right Ventricle	heart
11	chr1:184685600-184722600	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr1:184685800-184715000	Weak transcription	Small Intestine	intestine
13	chr1:184686200-184722600	Weak transcription	Brain Germinal Matrix	brain
14	chr1:184686400-184715600	Weak transcription	Colonic Mucosa	Colon
15	chr1:184688800-184714200	Weak transcription	Fetal Brain Male	brain
16	chr1:184689200-184709600	Weak transcription	NHLF	lung
17	chr1:184690400-184721800	Weak transcription	Colon Smooth Muscle	Colon
18	chr1:184695200-184715400	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr1:184695400-184714800	Weak transcription	HepG2	liver
20	chr1:184698200-184722800	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr1:184698400-184715000	Weak transcription	Fetal Lung	lung
22	chr1:184699400-184715200	Weak transcription	HUVEC	blood vessel
23	chr1:184699800-184710800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr1:184699800-184711600	Weak transcription	Gastric	stomach
25	chr1:184699800-184711600	Weak transcription	Thymus	Thymus
26	chr1:184699800-184722200	Weak transcription	Fetal Stomach	stomach
27	chr1:184700000-184711000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr1:184700000-184711600	Weak transcription	Psoas Muscle	Psoas
29	chr1:184701000-184714400	Weak transcription	Brain Cingulate Gyrus	brain
30	chr1:184701600-184721800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr1:184701800-184715000	Weak transcription	Brain Anterior Caudate	brain
32	chr1:184702000-184712000	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr1:184702200-184712000	Weak transcription	HUES64 Cell Line	embryonic stem cell
34	chr1:184702200-184714800	Weak transcription	Brain Angular Gyrus	brain
35	chr1:184702200-184721800	Weak transcription	Fetal Muscle Leg	muscle
36	chr1:184702200-184721800	Weak transcription	NH-A	brain
37	chr1:184702200-184722200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr1:184702600-184712200	Weak transcription	HMEC	breast
39	chr1:184702600-184712600	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr1:184702600-184715000	Weak transcription	Primary B cells from cord blood	blood
41	chr1:184703000-184715400	Weak transcription	HSMMtube	muscle
42	chr1:184703200-184721800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr1:184703200-184722800	Weak transcription	Fetal Muscle Trunk	muscle
44	chr1:184703400-184710800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr1:184703400-184714200	Weak transcription	Brain Hippocampus Middle	brain
46	chr1:184703400-184721400	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr1:184703600-184709600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr1:184703600-184711000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr1:184703600-184715000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr1:184703600-184715200	Weak transcription	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links