Variant report

Variant	rs11804229
Chromosome Location	chr1:67502053-67502054
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs17129601	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461751	chr1:67479598-67689036	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv546445	chr1:67479598-67689036	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:67451200-67506200	Weak transcription	Hela-S3	cervix
2	chr1:67455400-67509400	Weak transcription	Spleen	Spleen
3	chr1:67462400-67508400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr1:67465200-67502400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr1:67465200-67506400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr1:67470800-67505400	Weak transcription	Gastric	stomach
7	chr1:67471800-67503800	Weak transcription	Brain Substantia Nigra	brain
8	chr1:67472400-67502400	Weak transcription	Fetal Brain Male	brain
9	chr1:67473800-67518000	Weak transcription	A549	lung
10	chr1:67476000-67504600	Weak transcription	Lung	lung
11	chr1:67476000-67508400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr1:67478000-67508800	Weak transcription	Colonic Mucosa	Colon
13	chr1:67479800-67503200	Weak transcription	K562	blood
14	chr1:67484000-67518400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr1:67485400-67503600	Weak transcription	Ovary	ovary
16	chr1:67485400-67504000	Weak transcription	Brain Anterior Caudate	brain
17	chr1:67485400-67505800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr1:67485600-67503000	Weak transcription	Placenta	Placenta
19	chr1:67485800-67503000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr1:67485800-67504600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr1:67485800-67506200	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr1:67485800-67507600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr1:67486000-67509600	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr1:67486200-67516800	Weak transcription	NHEK	skin
25	chr1:67486800-67503200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr1:67486800-67503800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr1:67486800-67505400	Weak transcription	Left Ventricle	heart
28	chr1:67486800-67509200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr1:67486800-67515800	Weak transcription	Stomach Mucosa	stomach
30	chr1:67487000-67503000	Weak transcription	NHLF	lung
31	chr1:67487000-67503400	Weak transcription	Primary neutrophils fromperipheralblood	blood
32	chr1:67487000-67505400	Weak transcription	Esophagus	oesophagus
33	chr1:67487200-67502200	Weak transcription	Primary monocytes fromperipheralblood	blood
34	chr1:67487200-67502400	Weak transcription	Brain Angular Gyrus	brain
35	chr1:67487200-67503200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr1:67487200-67504000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
37	chr1:67487200-67505800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr1:67487600-67504000	Weak transcription	Thymus	Thymus
39	chr1:67487600-67504400	Weak transcription	Fetal Stomach	stomach
40	chr1:67487800-67505800	Weak transcription	Aorta	Aorta
41	chr1:67487800-67516600	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chr1:67488400-67506000	Weak transcription	HUES6 Cell Line	embryonic stem cell
43	chr1:67488400-67506400	Weak transcription	HUES48 Cell Line	embryonic stem cell
44	chr1:67488400-67518000	Weak transcription	Right Ventricle	heart
45	chr1:67489000-67503200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
46	chr1:67490800-67506000	Weak transcription	HSMMtube	muscle
47	chr1:67490800-67508800	Weak transcription	Pancreas	Pancrea
48	chr1:67493600-67505200	Weak transcription	Fetal Intestine Small	intestine
49	chr1:67493800-67506000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
50	chr1:67495000-67506600	Weak transcription	HMEC	breast

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