Variant report

Variant	rs11805328
Chromosome Location	chr1:211689597-211689598
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:211687551..211691125-chr1:211748742..211753518,8	MCF-7	breast:
2	chr1:211682048..211685729-chr1:211686598..211691532,5	K562	blood:
3	chr1:211688371..211691980-chr1:211692436..211695699,4	K562	blood:
4	chr1:211687762..211689998-chr1:211828619..211830675,2	K562	blood:
5	chr1:211670282..211671947-chr1:211688401..211690646,2	K562	blood:
6	chr1:211687643..211690440-chr1:211826057..211828065,2	MCF-7	breast:
7	chr1:211687930..211690976-chr1:211698757..211702069,3	K562	blood:
8	chr1:211687723..211692261-chr1:211692405..211697712,7	MCF-7	breast:
9	chr1:211684185..211686089-chr1:211689090..211692200,3	K562	blood:
10	chr1:211686791..211692090-chr1:211692436..211697358,7	K562	blood:

No data

Variant related genes	Relation type
ENSG00000170385	Chromatin interaction
ENSG00000222080	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11800588	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11805325	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11806169	0.86[ASN][1000 genomes]
rs12062602	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17017668	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2120669	0.89[ASN][1000 genomes]
rs2120670	0.89[ASN][1000 genomes]
rs2120671	0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2166104	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57302235	0.86[ASN][1000 genomes]
rs6669700	0.86[ASN][1000 genomes]
rs6699104	0.86[ASN][1000 genomes]
rs7542785	0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7553035	0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832514	chr1:211630247-211794963	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	esv1826724	chr1:211684336-211694508	Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211686000-211690800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:211686600-211691000	Enhancers	Stomach Mucosa	stomach
3	chr1:211687400-211689600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr1:211687600-211689600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr1:211687600-211690200	Enhancers	Sigmoid Colon	Sigmoid Colon
6	chr1:211687600-211690800	Enhancers	Spleen	Spleen
7	chr1:211688200-211701200	Weak transcription	Gastric	stomach
8	chr1:211688600-211690200	Flanking Active TSS	Liver	Liver
9	chr1:211688800-211690200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr1:211688800-211690600	Active TSS	Rectal Smooth Muscle	rectum
11	chr1:211689000-211690400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr1:211689000-211690600	Flanking Active TSS	HepG2	liver
13	chr1:211689200-211689600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr1:211689200-211690200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr1:211689200-211690200	Weak transcription	Thymus	Thymus
16	chr1:211689400-211689600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
17	chr1:211689400-211689600	Enhancers	Primary T helper naive cells from peripheral blood	blood
18	chr1:211689400-211689600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
19	chr1:211689400-211689600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr1:211689400-211689600	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
21	chr1:211689400-211689600	Enhancers	Primary T killer memory cells from peripheral blood	blood
22	chr1:211689400-211689600	Enhancers	Muscle Satellite Cultured Cells	--
23	chr1:211689400-211689600	Enhancers	Adipose Nuclei	Adipose
24	chr1:211689400-211689600	Enhancers	Fetal Kidney	kidney
25	chr1:211689400-211689600	Enhancers	Fetal Muscle Trunk	muscle
26	chr1:211689400-211689600	Enhancers	Fetal Muscle Leg	muscle
27	chr1:211689400-211689600	Bivalent Enhancer	Dnd41	blood
28	chr1:211689400-211689600	Enhancers	NH-A	brain
29	chr1:211689400-211689600	Enhancers	NHEK	skin
30	chr1:211689400-211689800	Enhancers	Primary B cells from cord blood	blood
31	chr1:211689400-211689800	Enhancers	Primary B cells from peripheral blood	blood
32	chr1:211689400-211689800	Enhancers	Primary hematopoietic stem cells	blood
33	chr1:211689400-211690000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr1:211689400-211690000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
35	chr1:211689400-211690000	Weak transcription	Esophagus	oesophagus
36	chr1:211689400-211690000	Enhancers	Rectal Mucosa Donor 31	rectum
37	chr1:211689400-211690000	Enhancers	Hela-S3	cervix
38	chr1:211689400-211690200	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr1:211689400-211690200	Enhancers	Colonic Mucosa	Colon
40	chr1:211689400-211690200	Enhancers	Rectal Mucosa Donor 29	rectum
41	chr1:211689400-211690400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr1:211689400-211690400	Weak transcription	Primary T helper cells PMA-I stimulated	--
43	chr1:211689400-211690400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr1:211689400-211690400	Weak transcription	Brain Angular Gyrus	brain
45	chr1:211689400-211690400	Weak transcription	Fetal Thymus	thymus
46	chr1:211689400-211690400	Weak transcription	Lung	lung
47	chr1:211689400-211690400	Weak transcription	HMEC	breast
48	chr1:211689400-211690600	Weak transcription	Primary T cells from cord blood	blood
49	chr1:211689400-211690600	Enhancers	Duodenum Mucosa	Duodenum
50	chr1:211689400-211690800	Enhancers	HUES6 Cell Line	embryonic stem cell

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