Variant report

Variant	rs11806070
Chromosome Location	chr1:216673822-216673823
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs4360581	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv549199	chr1:216384908-216814702	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv1003815	chr1:216504235-216836498	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv535289	chr1:216504235-216836498	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv1011849	chr1:216668381-216701163	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:216672200-216675800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr1:216672200-216699600	Weak transcription	Gastric	stomach
3	chr1:216672600-216674400	Enhancers	HepG2	liver
4	chr1:216672800-216674400	Enhancers	Duodenum Mucosa	Duodenum
5	chr1:216672800-216675800	Weak transcription	Stomach Mucosa	stomach
6	chr1:216673000-216674000	Enhancers	Hela-S3	cervix
7	chr1:216673200-216704600	Weak transcription	Pancreas	Pancrea
8	chr1:216673400-216674200	Enhancers	Fetal Intestine Large	intestine
9	chr1:216673400-216674200	Enhancers	Sigmoid Colon	Sigmoid Colon
10	chr1:216673400-216674600	Enhancers	Fetal Intestine Small	intestine
11	chr1:216673600-216674000	Enhancers	Liver	Liver
12	chr1:216673800-216674400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr1:216673800-216674600	Enhancers	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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