Variant report

Variant	rs11806076
Chromosome Location	chr1:45149716-45149717
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:45147664..45150642-chr1:45151686..45153747,2	MCF-7	breast:
2	chr1:45143056..45144712-chr1:45146668..45150379,3	MCF-7	breast:
3	chr1:45146220..45150573-chr1:45184890..45188749,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000199377	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11802279	0.86[AFR][1000 genomes]
rs17886324	1.00[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533037	chr1:44361728-45333408	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	469 gene(s)	inside rSNPs	diseases
2	nsv1004861	chr1:44843654-45210176	Flanking Active TSS Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	346 gene(s)	inside rSNPs	diseases
3	nsv534940	chr1:44843654-45210176	Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	346 gene(s)	inside rSNPs	diseases
4	nsv998476	chr1:45001278-45311757	Flanking Active TSS Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	426 gene(s)	inside rSNPs	diseases
5	nsv534941	chr1:45001278-45311757	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	426 gene(s)	inside rSNPs	diseases
6	nsv1014894	chr1:45139123-45397943	Flanking Active TSS Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	414 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:45140600-45150200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr1:45141000-45154200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr1:45141000-45154800	Weak transcription	Ovary	ovary
4	chr1:45141200-45164400	Weak transcription	Fetal Brain Female	brain
5	chr1:45142000-45158600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr1:45142000-45159400	Weak transcription	Brain Hippocampus Middle	brain
7	chr1:45142800-45151800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr1:45143000-45150000	Weak transcription	Primary B cells from peripheral blood	blood
9	chr1:45143600-45160600	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr1:45143600-45171800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr1:45144000-45150200	Weak transcription	Primary B cells from cord blood	blood
12	chr1:45144400-45150200	Weak transcription	Spleen	Spleen
13	chr1:45145000-45151800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr1:45145000-45154400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr1:45145000-45157000	Weak transcription	Brain Anterior Caudate	brain
16	chr1:45145200-45150400	Weak transcription	Adipose Nuclei	Adipose
17	chr1:45145600-45151800	Weak transcription	Fetal Intestine Small	intestine
18	chr1:45145800-45153800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr1:45146000-45172400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr1:45146600-45158800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr1:45147600-45152200	Enhancers	Monocytes-CD14+_RO01746	blood
22	chr1:45147800-45152200	Enhancers	Primary monocytes fromperipheralblood	blood
23	chr1:45148000-45157200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr1:45148200-45150000	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr1:45148200-45150200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr1:45148200-45154200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr1:45148200-45154200	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr1:45148200-45154600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr1:45148200-45155000	Weak transcription	Pancreas	Pancrea
30	chr1:45148400-45151000	Enhancers	HepG2	liver
31	chr1:45148600-45150000	Enhancers	Primary hematopoietic stem cells short term culture	blood
32	chr1:45148800-45154400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr1:45149000-45150200	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr1:45149000-45150200	Enhancers	GM12878-XiMat	blood
35	chr1:45149000-45152200	Enhancers	Primary neutrophils fromperipheralblood	blood
36	chr1:45149000-45154400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr1:45149000-45154600	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr1:45149200-45150200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr1:45149400-45166000	Weak transcription	Liver	Liver
40	chr1:45149600-45151200	Enhancers	Primary hematopoietic stem cells	blood
41	chr1:45149600-45151200	Enhancers	Fetal Thymus	thymus
42	chr1:45149600-45151800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links