Variant report

Variant	rs11806529
Chromosome Location	chr1:196282280-196282281
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs55633678	0.93[AFR][1000 genomes]
rs74133658	0.93[AFR][1000 genomes]
rs74133659	0.89[AFR][1000 genomes]
rs74136504	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74136505	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74136509	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74136516	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74136528	0.91[AFR][1000 genomes]
rs74136529	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7529694	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872952	chr1:196174790-196304223	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv548741	chr1:196186750-196293493	Bivalent Enhancer Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv832237	chr1:196205674-196328500	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv469680	chr1:196259846-196419016	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv482746	chr1:196259846-196419016	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv931415	chr1:196270759-196744780	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
7	nsv947365	chr1:196279294-196286170	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:196256600-196302800	Weak transcription	Ovary	ovary
2	chr1:196266200-196309600	Weak transcription	Fetal Kidney	kidney
3	chr1:196266800-196284400	Weak transcription	Fetal Muscle Leg	muscle
4	chr1:196268800-196304400	Weak transcription	Fetal Muscle Trunk	muscle
5	chr1:196273000-196313400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr1:196273400-196284400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr1:196275800-196313000	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr1:196276000-196305000	Weak transcription	Fetal Lung	lung
9	chr1:196278600-196285400	Weak transcription	Aorta	Aorta
10	chr1:196279400-196314400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr1:196280800-196282800	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr1:196281000-196282600	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr1:196281000-196282600	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr1:196281200-196282600	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr1:196281600-196282600	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr1:196281600-196282600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr1:196281600-196285200	Strong transcription	Liver	Liver
18	chr1:196281800-196282400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr1:196281800-196282600	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr1:196282000-196282400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr1:196282000-196282400	Enhancers	H9 Cell Line	embryonic stem cell
22	chr1:196282000-196285200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr1:196282200-196282400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
24	chr1:196282200-196282400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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