Variant report

Variant	rs11806554
Chromosome Location	chr1:113449332-113449333
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:113448950..113451242-chr1:113537407..113540142,2	MCF-7	breast:
2	chr1:113448862..113452902-chr1:113455376..113458880,4	K562	blood:
3	chr1:113447709..113449566-chr1:113450371..113452210,2	K562	blood:
4	chr1:113449050..113451234-chr1:113459095..113461088,2	K562	blood:
5	chr1:113448893..113450506-chr1:113473671..113476266,2	K562	blood:
6	chr1:113441801..113445545-chr1:113447072..113449494,3	K562	blood:
7	chr1:113448232..113450362-chr1:113454684..113457292,4	K562	blood:

No data

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11804107	0.89[AFR][1000 genomes]
rs11805071	1.00[AMR][1000 genomes]
rs57793802	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002971	chr1:112924725-113740584	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	166 gene(s)	inside rSNPs	diseases
2	nsv535059	chr1:112924725-113740584	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	166 gene(s)	inside rSNPs	diseases
3	nsv1010276	chr1:113123932-113740584	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	158 gene(s)	inside rSNPs	diseases
4	nsv533295	chr1:113167645-113589588	Flanking Active TSS Active TSS Strong transcription Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
5	nsv1012119	chr1:113214869-113759081	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
6	nsv535060	chr1:113214869-113759081	Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
7	nsv529238	chr1:113229946-113759080	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
8	nsv997426	chr1:113288282-113639507	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
9	nsv1004102	chr1:113295805-113551210	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
10	esv3399982	chr1:113358580-113542255	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
11	nsv999915	chr1:113360145-113684833	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
12	esv18293	chr1:113375437-113852815	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
13	esv3362439	chr1:113376621-113450321	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
14	nsv1007045	chr1:113425222-113839910	Genic enhancers Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:113439200-113459200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:113439200-113460400	Weak transcription	Aorta	Aorta
3	chr1:113440200-113456400	Weak transcription	Primary hematopoietic stem cells	blood
4	chr1:113440400-113459600	Weak transcription	Primary T cells from cord blood	blood
5	chr1:113443800-113449600	Enhancers	Stomach Mucosa	stomach
6	chr1:113444400-113454400	Weak transcription	HepG2	liver
7	chr1:113444400-113456600	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr1:113445000-113450400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr1:113445600-113449400	Enhancers	HMEC	breast
10	chr1:113445800-113449600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr1:113445800-113449600	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr1:113445800-113450000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr1:113445800-113450400	Enhancers	Brain Hippocampus Middle	brain
14	chr1:113446000-113449600	Enhancers	Hela-S3	cervix
15	chr1:113446000-113450600	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr1:113446000-113456600	Weak transcription	Fetal Heart	heart
17	chr1:113446200-113449600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr1:113446200-113449600	Enhancers	Osteobl	bone
19	chr1:113446200-113455600	Weak transcription	A549	lung
20	chr1:113446400-113449600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr1:113446400-113449600	Enhancers	Muscle Satellite Cultured Cells	--
22	chr1:113446400-113450000	Weak transcription	Gastric	stomach
23	chr1:113446400-113457800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr1:113446600-113449600	Enhancers	HUES64 Cell Line	embryonic stem cell
25	chr1:113446600-113459600	Weak transcription	Primary T helper cells fromperipheralblood	blood
26	chr1:113446800-113450000	Enhancers	HUVEC	blood vessel
27	chr1:113446800-113459800	Weak transcription	Psoas Muscle	Psoas
28	chr1:113447000-113449600	Enhancers	iPS-15b Cell Line	embryonic stem cell
29	chr1:113447000-113452800	Weak transcription	Stomach Smooth Muscle	stomach
30	chr1:113447000-113454600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr1:113447200-113450600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr1:113447200-113455400	Weak transcription	Monocytes-CD14+_RO01746	blood
33	chr1:113447200-113456000	Weak transcription	Primary T helper cells PMA-I stimulated	--
34	chr1:113447200-113456400	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr1:113447400-113449600	Enhancers	ES-I3 Cell Line	embryonic stem cell
36	chr1:113447400-113449600	Enhancers	Adipose Nuclei	Adipose
37	chr1:113447400-113449800	Enhancers	iPS-18 Cell Line	embryonic stem cell
38	chr1:113447400-113452600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr1:113447400-113459200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr1:113447400-113459600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
41	chr1:113447600-113449600	Enhancers	Colonic Mucosa	Colon
42	chr1:113447600-113456200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr1:113447800-113449600	Enhancers	K562	blood
44	chr1:113447800-113452400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr1:113447800-113457800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr1:113447800-113458000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr1:113447800-113459600	Weak transcription	Colon Smooth Muscle	Colon
48	chr1:113447800-113470200	Weak transcription	Fetal Kidney	kidney
49	chr1:113448000-113449600	Enhancers	Brain Angular Gyrus	brain
50	chr1:113448000-113449600	Enhancers	Brain Cingulate Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links