Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:170096762..170100678-chr1:170100891..170103692,3	K562	blood:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11799351	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11799803	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs11800956	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs11805430	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11806707	1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs12117197	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12117892	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12120443	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12120485	1.00[ASN][1000 genomes]
rs12131296	1.00[ASN][1000 genomes]
rs12131740	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12132888	1.00[ASN][1000 genomes]
rs12134995	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12135070	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12141461	1.00[ASN][1000 genomes]
rs17345810	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17349942	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6671761	0.89[EUR][1000 genomes]
rs6703198	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7519877	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7528074	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014033	chr1:169968488-170453021	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
2	nsv535200	chr1:169968488-170453021	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	nsv999310	chr1:170065943-170223350	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:170096200-170100800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr1:170096200-170100800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr1:170096400-170100400	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr1:170096400-170100600	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr1:170096400-170100600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr1:170096400-170100800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr1:170096800-170100200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr1:170097200-170101000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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