Variant report

Variant	rs11807967
Chromosome Location	chr1:150824871-150824872
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:150824595..150826389-chr1:150944188..150947184,2	K562	blood:
2	chr1:150824355..150826588-chr1:150896874..150898598,2	MCF-7	breast:
3	chr1:150824402..150827386-chr1:150847961..150849827,2	MCF-7	breast:
4	chr1:150816940..150818547-chr1:150824662..150826760,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000143437	Chromatin interaction
ENSG00000143418	Chromatin interaction
ENSG00000231073	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10305740	1.00[CHD][hapmap];1.00[LWK][hapmap]
rs10305742	1.00[CHD][hapmap]
rs10305754	1.00[LWK][hapmap]
rs12032880	1.00[LWK][hapmap]
rs12077457	1.00[LWK][hapmap]
rs12124031	1.00[CHD][hapmap]
rs2229175	1.00[CHD][hapmap];1.00[LWK][hapmap]
rs2275237	1.00[CHD][hapmap]
rs6587519	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2829859	chr1:150608894-150937329	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv872418	chr1:150683512-150860471	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv1001897	chr1:150743271-151241600	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
4	nsv535158	chr1:150743271-151241600	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
5	nsv872420	chr1:150786038-150847647	Strong transcription Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv1010875	chr1:150796816-150845827	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
7	esv1793983	chr1:150804748-150825924	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:150807400-150847000	Weak transcription	Colonic Mucosa	Colon
2	chr1:150808800-150847000	Weak transcription	Psoas Muscle	Psoas
3	chr1:150809200-150846800	Weak transcription	Brain Cingulate Gyrus	brain
4	chr1:150809600-150846000	Weak transcription	Pancreas	Pancrea
5	chr1:150810400-150846600	Weak transcription	Fetal Heart	heart
6	chr1:150812000-150831200	Weak transcription	Lung	lung
7	chr1:150812000-150847000	Weak transcription	Gastric	stomach
8	chr1:150812200-150828000	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr1:150812200-150829800	Weak transcription	HUVEC	blood vessel
10	chr1:150812200-150834000	Weak transcription	Brain Angular Gyrus	brain
11	chr1:150812400-150830800	Weak transcription	Ovary	ovary
12	chr1:150812400-150840600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr1:150812400-150842000	Weak transcription	Esophagus	oesophagus
14	chr1:150812400-150846800	Weak transcription	Fetal Kidney	kidney
15	chr1:150812600-150846000	Weak transcription	Small Intestine	intestine
16	chr1:150812600-150846800	Weak transcription	Rectal Smooth Muscle	rectum
17	chr1:150814600-150833400	Weak transcription	Hela-S3	cervix
18	chr1:150814800-150839600	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr1:150815200-150832000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr1:150815400-150825800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr1:150815400-150842400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr1:150815400-150846800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr1:150815600-150838000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr1:150816600-150829200	Weak transcription	HSMM	muscle
25	chr1:150817400-150827600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr1:150819600-150831200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr1:150820600-150846800	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr1:150821000-150825600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr1:150821200-150846600	Weak transcription	Aorta	Aorta
30	chr1:150821200-150846600	Weak transcription	Brain Hippocampus Middle	brain
31	chr1:150821200-150846800	Weak transcription	Brain Anterior Caudate	brain
32	chr1:150821200-150848600	Weak transcription	Spleen	Spleen
33	chr1:150822400-150827400	Weak transcription	Right Ventricle	heart
34	chr1:150822400-150827400	Weak transcription	Stomach Smooth Muscle	stomach
35	chr1:150822400-150829600	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr1:150822400-150846800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr1:150822600-150826200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
38	chr1:150822800-150826600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr1:150823000-150825000	Strong transcription	Thymus	Thymus
40	chr1:150823600-150826800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr1:150824000-150830600	Strong transcription	Fetal Muscle Trunk	muscle
42	chr1:150824200-150827600	Strong transcription	Placenta	Placenta
43	chr1:150824200-150829400	Strong transcription	Fetal Stomach	stomach
44	chr1:150824200-150831000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr1:150824400-150825000	Genic enhancers	Primary B cells from peripheral blood	blood
46	chr1:150824400-150825000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr1:150824400-150825000	Strong transcription	Left Ventricle	heart
48	chr1:150824400-150825200	Strong transcription	Fetal Brain Male	brain
49	chr1:150824400-150825200	Strong transcription	Fetal Thymus	thymus
50	chr1:150824400-150825400	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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