Variant report

Variant	rs11808094
Chromosome Location	chr1:47989572-47989573
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11802608	1.00[EUR][1000 genomes]
rs12073935	1.00[MEX][hapmap]
rs1567309	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6670118	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6675052	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6678957	1.00[EUR][1000 genomes]
rs6681218	1.00[EUR][1000 genomes]
rs6683513	0.97[AFR][1000 genomes]
rs6688084	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6688278	0.99[AFR][1000 genomes]
rs74069524	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001779	chr1:47884229-48111485	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv871299	chr1:47889417-48057890	Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	esv2755190	chr1:47907580-48048680	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:47988200-47989600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr1:47988200-47990800	Weak transcription	Aorta	Aorta
3	chr1:47988600-47990400	Enhancers	H9 Cell Line	embryonic stem cell
4	chr1:47988800-47989600	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr1:47988800-47989600	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr1:47988800-47989800	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
7	chr1:47988800-47989800	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
8	chr1:47988800-47989800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr1:47988800-47990200	Enhancers	Primary hematopoietic stem cells	blood
10	chr1:47989000-47989800	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr1:47989000-47990000	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
12	chr1:47989000-47990000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr1:47989000-47991600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr1:47989200-47989600	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr1:47989200-47989600	Flanking Active TSS	Liver	Liver
16	chr1:47989200-47989600	Enhancers	Fetal Brain Female	brain
17	chr1:47989200-47989600	Enhancers	Lung	lung
18	chr1:47989200-47989800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr1:47989200-47990000	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr1:47989200-47991000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr1:47989400-47989600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr1:47989400-47989800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr1:47989400-47990400	Enhancers	Stomach Mucosa	stomach

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