Variant report

Variant	rs11808168
Chromosome Location	chr1:73444781-73444782
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11799576	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11805940	1.00[AMR][1000 genomes]
rs11810368	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012319	chr1:73337418-73547086	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:73429400-73445400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr1:73434600-73445000	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr1:73442200-73447600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr1:73443000-73451200	Active TSS	iPS-15b Cell Line	embryonic stem cell
5	chr1:73443000-73451800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr1:73443400-73445200	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr1:73444000-73446000	Transcr. at gene 5' and 3'	HUES6 Cell Line	embryonic stem cell
8	chr1:73444200-73447400	Active TSS	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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