Variant report

Variant	rs11808213
Chromosome Location	chr1:58063427-58063428
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12409420	0.83[ASN][1000 genomes]
rs12411177	1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs12562145	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1534047	0.80[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17470462	0.80[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1829985	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2030719	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2140705	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4912266	0.92[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61769600	0.84[ASN][1000 genomes]
rs61769601	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6587785	0.92[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72908555	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs74077726	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7528953	0.84[CHB][hapmap];0.93[JPT][hapmap];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7532306	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817216	chr1:57801783-58130775	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1001771	chr1:57837089-58068175	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1012555	chr1:57950355-58103389	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1015057	chr1:57976993-58793962	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv530017	chr1:58002290-58669736	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv523574	chr1:58018103-58087789	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv871684	chr1:58021206-58096379	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:58061200-58064400	Enhancers	Fetal Heart	heart
2	chr1:58061400-58063600	Enhancers	H1 Cell Line	embryonic stem cell
3	chr1:58061400-58064600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr1:58061400-58065200	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr1:58061400-58066000	Enhancers	H9 Cell Line	embryonic stem cell
6	chr1:58061400-58066000	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr1:58061400-58067200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr1:58061800-58063600	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr1:58061800-58063600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr1:58061800-58065200	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr1:58062400-58063600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr1:58062400-58066400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr1:58062600-58064400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr1:58062800-58064400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr1:58063000-58064000	Weak transcription	Fetal Muscle Leg	muscle
16	chr1:58063000-58064200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr1:58063000-58069600	Weak transcription	Stomach Mucosa	stomach
18	chr1:58063200-58064200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr1:58063200-58064200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr1:58063200-58064200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr1:58063200-58064200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr1:58063200-58065600	Enhancers	iPS-20b Cell Line	embryonic stem cell
23	chr1:58063400-58063800	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr1:58063400-58063800	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr1:58063400-58066200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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