Variant report

Variant	rs11808301
Chromosome Location	chr1:174626670-174626671
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11800589	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs11802150	1.00[AFR][1000 genomes]
rs6666169	1.00[AFR][1000 genomes]
rs72715270	1.00[AFR][1000 genomes]
rs72715277	1.00[AFR][1000 genomes]
rs72715289	1.00[AFR][1000 genomes]
rs72717622	1.00[AFR][1000 genomes]
rs72717643	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014637	chr1:174265631-174826765	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv535208	chr1:174265631-174826765	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv1014753	chr1:174271770-174694838	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv2755184	chr1:174388343-174970343	Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
5	nsv534381	chr1:174468168-174656796	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv1803591	chr1:174594575-174642336	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:174607600-174628600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr1:174607600-174637000	Weak transcription	Primary B cells from peripheral blood	blood
3	chr1:174607600-174677800	Weak transcription	Primary B cells from cord blood	blood
4	chr1:174612400-174638200	Weak transcription	Aorta	Aorta
5	chr1:174613600-174637000	Weak transcription	Primary T cells from cord blood	blood
6	chr1:174623200-174628600	Weak transcription	Fetal Heart	heart
7	chr1:174625400-174636600	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr1:174625800-174634800	Weak transcription	GM12878-XiMat	blood
9	chr1:174626000-174628400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr1:174626200-174629400	Weak transcription	Fetal Brain Male	brain
11	chr1:174626400-174628600	Weak transcription	HepG2	liver
12	chr1:174626600-174627000	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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