Variant report

Variant	rs11808391
Chromosome Location	chr1:168647094-168647095
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10489359	0.87[ASW][hapmap];0.83[LWK][hapmap];0.88[MKK][hapmap];0.85[TSI][hapmap];0.80[YRI][hapmap];0.82[AFR][1000 genomes]
rs11588432	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs11588434	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs11590795	0.82[AFR][1000 genomes]
rs12726636	0.82[AFR][1000 genomes]
rs12727749	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs12745063	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs12748015	0.82[AFR][1000 genomes]
rs12749426	0.81[AFR][1000 genomes]
rs12749876	0.82[AFR][1000 genomes]
rs1412334	0.82[AFR][1000 genomes]
rs1415678	0.82[AFR][1000 genomes]
rs17502304	0.82[AFR][1000 genomes]
rs17502351	0.82[AFR][1000 genomes]
rs17502574	0.81[AFR][1000 genomes]
rs2223911	0.81[AFR][1000 genomes]
rs34099957	0.82[AFR][1000 genomes]
rs35492795	0.95[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs6688592	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007846	chr1:168449940-168687265	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv869415	chr1:168467284-169153863	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
3	nsv831836	chr1:168538779-168716956	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv872530	chr1:168618641-168658544	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1001684	chr1:168636622-168663398	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv946495	chr1:168646258-168647441	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:168642000-168647200	Weak transcription	Brain Angular Gyrus	brain
2	chr1:168644800-168647400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr1:168646400-168647200	Enhancers	Brain Substantia Nigra	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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