Variant report

Variant	rs11809310
Chromosome Location	chr1:217006900-217006901
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs11572602	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762163	chr1:216982140-217015625	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:217003200-217007200	Enhancers	Fetal Heart	heart
2	chr1:217004400-217014600	Weak transcription	Fetal Muscle Leg	muscle
3	chr1:217004800-217008400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr1:217005600-217009800	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr1:217005800-217007200	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr1:217005800-217008000	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr1:217006000-217038000	Weak transcription	Pancreas	Pancrea
8	chr1:217006200-217007200	Weak transcription	Left Ventricle	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links